| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,912,078 | A→G | S167P (TCC→CCC) | htpX ← | zinc dependent endoprotease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,912,078 | 0 | A | G | 95.7% | 73.5 / NA | 23 | S167P (TCC→CCC) | htpX | zinc dependent endoprotease |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (12/10); total (12/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGCTCGCCAGAATACCAAACACCAGTTCCAGAACCGTTGCAACCGCAAAGTAGATCAGCGGGTTGCCGTTGCTCTCTTCACCTTCATCACGATTTCCGCCCATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGAAATAAAGATAACGAAGGTGTTCACCACGCCCTGAATCAGCGTCATGGTGACCATATCACCATTGGCGATGTGGCTGATTTCGTGAGCAATTACCGCCTCGGCTTCATCCGGGCTC > NC_000913/1911943‑1912193 | tGCTCGCCAGAATACCAAACACCAGTTCCAGAACCGTTGCAACCGCAAAGTAGATCAGCGGGTTGCCGTTGCTCTCTTCACCTTCATCACGATTTCCGCCCATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGGAATa < 1:449456/140‑1 (MQ=255) cGCCAGAATACCAAACACCAGTTCCAGAACCGTTGCAACCGCAAAGTAGATCAGCGGGTTGCCGTTGCTCTCTTCACCTTCATCACGATTTCCGCCCATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGa > 1:485692/1‑140 (MQ=255) cAAACACCAGTTCCAGAACCGTTGCAACCGCAAAGTAGATCAGCGGGTTGCCGTTGCTCTCTTCACCTTCATCACGATTTCCGCCCATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAg < 2:390601/137‑1 (MQ=255) cAAACACCAGTTCCAGAACCGTTGCAACCGCAAAGTAGATCAGCGGGTTGCCGTTGCTCTCTTCACCTTCATCACGATTTCCGCCCATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAg > 1:390601/1‑137 (MQ=255) aaCACCAGTTCCAGAACCGTTGCAACCGCAAAGTAGATCAGCGGGTTGCCGTTGCTCTCTTCACCTTCATCACGATTTCCGCCCATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAGGTGtt > 2:24835/1‑140 (MQ=255) acCAGTTCCAGAACCGTTGCAACCGCAAAGTAGATCAGCGGGTTGCCGTTGCTCTCTTCACCTTCATCACGATTTCCGCCCATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAGGTGTTcac > 1:554225/1‑140 (MQ=255) tCCAGAACCGTTGCAACCGCAAAGTAGATCAGCGGGTTGCCGTTGCTCTCTTCACCTTCATCACGATTTCCGCCCATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAGGTGTTCACCACGcc < 1:402295/140‑1 (MQ=255) tCCAGAACCGTTGCAACAGCAATGTAGATCACCGGTTTGTCGTTGCTCCCTTCACCTTCATCACGATTTCCGCCCATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAGGTGTTCACCACGcc < 2:178986/140‑1 (MQ=255) gAACCGTTGCAACCGCAAAGTAGATCAGCGGGTTGCCGTTGCTCTCTTCACCTTCATCACGATTTCCGCCCATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAGGTGTTCACCACGCCCTGa < 1:24835/140‑1 (MQ=255) ttGCAACCGCAAAGTAGATCAGCGGGTTGCCGTTGCTCTCTTCACCTTCATCACGATTTCCGCCCATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAGGTGTTCACCACGCCCTGAATCAGc > 1:365658/1‑140 (MQ=255) cAAAGTAGATCAGCGGGTTGCCGTTGCTCTCTTCACCTTCATCACGATTTCCGCCTATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAGGTGTTCACCACGCCCTGAATCAGCGTCATGGTg < 2:18816/140‑1 (MQ=255) ggTTGCCGTTGCTCTCTTCACCTTCATCACGATTTCCGCCCATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAGGTGTTCACCATGCCCTGAGTCAGCGGCATGGTGACCATATCACCATTg > 1:168331/1‑140 (MQ=255) ggTTGCCGTTGCTCTCTTCACCTTCATCACGATTTCCGCCCATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAGGTGTTCACCACGCCCTGACTCATCGTCATGGTCACCATATCACCATTg > 1:227121/1‑140 (MQ=255) ggTTGCCGTTGCTCTCTTCACCTTCATCACGATTTCCGCCCATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAGGTGTTCACCACGCCCTGAATCAGCGTCATGGTGACCATATCACCATTg > 1:146719/1‑140 (MQ=255) tGCCGTTGCTCTCTTCACCTTCATCACGATTTCCGCCCATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAGGTGTTCACCACGCCCTGAATCAGCGTCATGGTGACCATATCACCATTGGCg > 1:121247/1‑140 (MQ=255) tcaCGATTTCCGCCCATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAGGTGTTCACCACGCCCTGAATCAGCGACATGGTGAGCATTTCAACATTGGCGGTGTGACTGATTTCGTGAGCAAt > 2:194400/1‑140 (MQ=255) aTTTCCGCCCATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAGGTGTTCACCACGCCCTGAATCAGCGTCATGGTGACCATATCACCATTGGCGATGTGGCTGATTTCGTGAGCAATTACCg > 1:526737/1‑140 (MQ=255) tAAAACCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAGGTGTTCACCACGCCCTGAATCAGCGTCATGGTGACCATATCACCATTGGCGAGGTGGCTGGTTTGGTGAGCAATGACCGCCTCGGCTTCa > 1:182966/1‑140 (MQ=255) aaCCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAGGTGTTCACCACGCCCTGAATCAGCGTCATGGTGACCATATCCCCATTGGCGATGTGGCTGATTTCGTGAGCAATTACCGCCTCGGCTTCATcc < 2:121247/140‑1 (MQ=255) aCCCGCGGCAAGCTGTGCCAGACTATGGGAAATAAAGCTAACGAAGGTGTTCACCACGCCCTGAATCAGCGTCATGGTGACCATATCACCATTGGCGATGTGGCTGATTTCGTGAGCAATTACCGCCTCGGCTTCATCCg < 1:194400/140‑1 (MQ=255) aCCCGCGGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAGGTGTTCCCCACGCCCTGAATCAGCGTCATGGTGACCATATCACCTTTGGCGATGTGGCTGATTTCGTGAGCAATTACCGCCTCGGCTTCATCCg < 2:485692/140‑1 (MQ=255) cgcgGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAGGTGTTCACCACGCCCTGAATCAGCGTCATGGTGACCATATCACCATTGGCGATGTGGCTGATTTCGTGAGCAATTACCGCCTCGGCTTCATCCGGGc < 2:661308/140‑1 (MQ=255) cgGCAAGCTGCGCCAGAATACGGGGAATAAAGATAACGAAGGTGTTCACCACGCCCTGAATCAGCGTCATGGTGACCATATCACCATTGGCGATGTGGCTGATTTCGTGAGCAATTACCGCCTCGGCTTCATCCGGGCTc < 2:146719/140‑1 (MQ=255) | TGCTCGCCAGAATACCAAACACCAGTTCCAGAACCGTTGCAACCGCAAAGTAGATCAGCGGGTTGCCGTTGCTCTCTTCACCTTCATCACGATTTCCGCCCATAAAACCCGCGGCAAGCTGCGCCAGAATACGGGAAATAAAGATAACGAAGGTGTTCACCACGCCCTGAATCAGCGTCATGGTGACCATATCACCATTGGCGATGTGGCTGATTTCGTGAGCAATTACCGCCTCGGCTTCATCCGGGCTC > NC_000913/1911943‑1912193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |