| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,330,784 | T→C | pseudogene (3619/4605 nt) | yfaS ← | putative macroglobulin family protein, N‑terminal fragment |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,330,784 | 0 | T | C | 100.0% | 87.0 / NA | 25 | pseudogene (3619/4605 nt) | yfaS | putative macroglobulin family protein, N‑terminal fragment |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (16/9); total (16/9) | |||||||||||
GGACTTCAACTGCGCTTTTTTCAGCAACGTCATGGTTAAGACGTTTGCCACCGCATCTGCCAGTGGAGACTCCGGTGTATCGAGGATCAGGCTATCATTGATATCGCGGGTGTCTTCCTCAGAGAAATCTTCAGTTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCTGCGCCCATGCCAGCACCAGCGCCCGATGCAATAACGGCATGTTATCTGCCTGCTCCGCGTAG > NC_000913/2330650‑2330917 | ggACTTCAACTGCGCTTTTTTCAGCAACGTCATGGTTAAGACGTTTGCCACCGCATCTGCCAGTGGAGACTCCGGTGTATCGAGGATCAGGCTATCATTGATATCGCGGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAg > 1:417655/1‑140 (MQ=255) cAACTGCGCTTTTTTCAGCAACGTCATGGTTAAGACGTTTGCCACCGCATCTGCCAGTGGAGACTCCGGTGTATCGAGGATCAGGCTATCATTGATATCGCGAGTGTCTTACTCTGATAAATCTGCAGCTTTAGTTCcgc > 1:311445/1‑140 (MQ=255) tCAGCAACGTCATGGTTAAGACGTTTGCCACCGCATCTGCCAGTGGAGACTCCGGTGTATCGAGGATCAGGCTATCATTGATATCGCGGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCt < 1:400758/140‑1 (MQ=255) tCAGCAACGTCATGGTTAAGACGTTTGCCACCGCATCTGCCAGTGGAGACTCCGGTGTATCGAGGATCAGGCTATCATTGATATCGCGGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCt < 2:417655/140‑1 (MQ=255) gACGTTTGCCACCGCATCTGCCAGTGGAGACTCCGGTGTATCGAGGATCAGGCTATCATTGATATCGCGGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCAGCGTCGGGCGATAGCTTGATCCAACCCTTTcaaca > 2:175870/1‑140 (MQ=255) tGGAGACTCCGGTGTATCGAGGATCAGGCTATCATTGATATCGCGGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCAtct > 2:547860/1‑140 (MQ=255) tGGAGACTCCGGTGTATCGAGGATCAGGCTATCATTGATATCGCGGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCAtct > 2:495696/1‑140 (MQ=255) agaCTCCGGTGTATCGATGATCTGGCTATCATTAATATCGCGGGTGTCTTCCTCAGAGAAATCTTCAGCCTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCt < 2:299651/140‑1 (MQ=255) ggTGTATCGAGGATCAGGCTATCATTGATATCGCGGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCTGCGCCCa > 2:104699/1‑140 (MQ=255) aTCGAGGATCAGGCTATCATTGATATCGCGGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCTGCGCCCATGCCa > 1:131668/1‑140 (MQ=255) gATCAGGCTATCATTGATATCGCGGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCTGCGCCCATGCCAGCACCa > 1:465935/1‑140 (MQ=255) ggCTATCATTGATATCGCGGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCTGCGCCCATGCCAGCACCAGCGcc > 2:461551/1‑140 (MQ=255) ggCTATCATTGATATCGCGGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATGCATCTCCTCCGCCCGTGCCAGCACCAGCGcc > 2:294325/1‑140 (MQ=255) tCATTGATATCGCGGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCTGCGCCCATGCCAGCACCAGCGCCCGATg > 2:621560/1‑140 (MQ=255) aTTGATATCGCGGGTATCTTCCTCAGAGAAATCTTCACCTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCTGCGCCCATGCCAGCACCAGCGCCCGATGCa < 1:175870/140‑1 (MQ=255) tatCGCGGGTGTCTTTCTCAGACAATTCTTCAGCTTTCGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCTGCGCCCATGCCAGCACCAGCGCCCGATGCAATAAc < 1:196476/140‑1 (MQ=255) atCGCGGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCTGCGCCCATGCCAGCACCAGCGCCCGATGCAATAACg > 1:366507/1‑140 (MQ=255) cgcgGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCTGCTCCCATGCCAGCACCAGCACCCGATGCAATAACGGc > 2:217618/1‑140 (MQ=255) cgcgGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCTCCGCCCATGCCATCATCAGCGCACGATGCAATAACGGc > 1:313534/1‑140 (MQ=255) gcgGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCTGCGCCCATGCCAGCACCAGCGCCCGATGCAATAACGGCa < 1:547860/140‑1 (MQ=255) gcgGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCTGCGCCCATGCCAGCACCAGCGCCCGATGCAATAACGGCa < 1:545118/140‑1 (MQ=255) gcgGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCTGCGCCCATGCCAGCACCAGCGCCCGATGCAATAACGGCa < 1:495696/140‑1 (MQ=255) cgGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCTGCGCCCATGCCAGCACCAGCGCCCGATGCAATAACGGCAt > 2:641445/1‑140 (MQ=255) cgGGTGTCTTCCTCAGAGAAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATGCATCTCCTGCGCTCATGCCAGCACCAGCGCACGATGCAATAACGGCAt > 2:196476/1‑140 (MQ=255) gaAATCTTCAGCTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCTGCGCCCATGCCAGCACCAGCGCCCGATGCAATAACGGCATGTTATCTGCCTGCTCcg > 1:62938/1‑140 (MQ=255) cTTCAGCTTTAGTTCCGCGCCGTGCGATAGCGTCACCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCTGCGCCCATGCCAGCACCAGCGCCCGATGCAATAACGGCATGTTATCTGCCTGCTCCGCGTAg < 2:226980/140‑1 (MQ=255) | GGACTTCAACTGCGCTTTTTTCAGCAACGTCATGGTTAAGACGTTTGCCACCGCATCTGCCAGTGGAGACTCCGGTGTATCGAGGATCAGGCTATCATTGATATCGCGGGTGTCTTCCTCAGAGAAATCTTCAGTTTTAGTTCCGCGCCGGGCGATAGCTTCATCCAACCCTTTCAACAACGTTTTGCACGGCAAATTCATCTCCTGCGCCCATGCCAGCACCAGCGCCCGATGCAATAACGGCATGTTATCTGCCTGCTCCGCGTAG > NC_000913/2330650‑2330917 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |