| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,359,120 | A→G | G304G (GGT→GGC) | cadB ← | lysine:cadaverine antiporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,359,120 | 0 | A | G | 98.3% | 190.6 / ‑4.7 | 58 | G304G (GGT→GGC) | cadB | lysine:cadaverine antiporter |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (29/28); total (29/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.41e-01 | |||||||||||
GTCAGATGCTTTACCACCGGCAGAGTTCATCAGAGTGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCAC > NC_000913/4358985‑4359250 | gTCAGATGCTTTACCACCGGCAGAGTTCATCAGAGTGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCcgt > 1:557780/1‑140 (MQ=255) tCAGATGCTTTACCACCGGCAGAGTTCATCAGAGTGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCcgtc > 2:46934/1‑140 (MQ=255) aGATGCTTTACCACCGGCAGAGTTCATCAGAGTGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCcgtcgt < 2:72495/140‑1 (MQ=255) aTGCTTTACCACCGGCAGAGTTCATCAGAGTGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTa > 2:604626/1‑140 (MQ=255) aTGCTTTACCACCGGCAGAGTTCATCAGAGTGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTa > 2:505540/1‑140 (MQ=255) cTTTACCACCGGCAGGGTTCATCAGAGTGGTAAGGATTATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCg < 1:298618/140‑1 (MQ=255) cTTTACCACCGGCAGAGTTCATCAGAGTGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCg < 1:505540/140‑1 (MQ=255) ttACCACCGGCAGAGTTCATCAGAGTGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTGGCTGTCGATTTCCCCAAAAACTTTCAGGAAATTGCCGTCGTTAGCGGc > 2:224029/1‑140 (MQ=255) ttACCACCGGCAGAGTTCATCAGAGTGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTCGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGc > 1:609622/1‑140 (MQ=255) ggCAGAGTTCATCAGAGTGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAAATTTCGGGAAGTTGCCGTGGTTAGCGGCACGTacac > 2:280052/1‑140 (MQ=255) ggCAGAGTTCATCAGAGTGATAAGGATCATCAGGGCAGTAATTTTCACCGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTacac < 2:205371/140‑1 (MQ=255) gCAGAGTTCATCAGAGTGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACAcc > 1:587825/1‑140 (MQ=255) agTTCATCAGAGTGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACAcctgcc > 1:86392/1‑140 (MQ=255) tcatcaGAGTGATAAGGTTCATCAGGGCAGTGATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTG‑CGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGc < 2:238659/140‑1 (MQ=255) agagTGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTAc < 2:23621/140‑1 (MQ=255) tGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTGGGGAAGTTGCCGGCGTAAGCGGCACCTACAGCTGCCTGGCCTACCAAc > 2:183767/1‑140 (MQ=255) tGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAAc > 2:11186/1‑140 (MQ=255) tGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAAc < 2:86392/140‑1 (MQ=255) aaGGATAATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAAcatca < 1:403839/140‑1 (MQ=255) atcatcAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACAGCTGCCTGGCTTACCAACATCATCCa > 1:168734/1‑140 (MQ=255) tcatcaGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAg < 2:496546/140‑1 (MQ=255) ccatcaGGGCAGTCATTTTCACTGCAGTCAGCAGCAGAACTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACATTCGGAAAGAGGACGTCGTTAGCGGCACGTCCACCTGCCTGGCCTACCAAcatcaacaac < 2:609622/139‑6 (MQ=255) catcaGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTAGACCAGCTTGGCCTGCCAACATCATCCAgg > 1:192489/1‑140 (MQ=255) catcaGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCAGCACGTAGACCAGCTTGGCCTACCAACATCATCCAgg > 1:221637/1‑140 (MQ=255) tcaGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCCACCAACATCATCCAGGAg > 2:497452/1‑140 (MQ=255) caGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGc < 1:497452/140‑1 (MQ=255) ggCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCa < 1:107696/140‑1 (MQ=255) ggCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGGACACCTGGCTGCCCTACCAACATCATCCAGGAGCCCa > 1:293942/1‑140 (MQ=255) gCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCag > 1:47676/1‑140 (MQ=255) cAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCaga < 1:5720/140‑1 (MQ=255) tCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGaa > 2:609663/1‑140 (MQ=255) tCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGaa > 2:129067/1‑140 (MQ=255) tCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGaa > 1:141113/1‑140 (MQ=255) tCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGaa > 1:575361/1‑140 (MQ=255) ttCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAg > 1:364017/1‑140 (MQ=255) ttCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACCTACACCTGACTGGCCTCCCAACATCTTCCACGAGCCCAGAGAAGTCAg > 2:221517/1‑140 (MQ=255) tCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAgg < 1:112662/140‑1 (MQ=255) cagccagcAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTCCACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCa < 2:135218/140‑1 (MQ=255) cagccagcAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCa < 2:364017/140‑1 (MQ=255) cagccagcAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCa < 2:587825/140‑1 (MQ=255) agccagcAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCaa < 1:609663/140‑1 (MQ=255) agcagcagACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTAGCCTACCAACATCATCGAGGAGCCCGGAGAGGTCAGGCACGCAAAGGc > 2:198858/1‑140 (MQ=255) agcagACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGt < 2:47676/140‑1 (MQ=255) cTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCa > 1:356467/1‑140 (MQ=255) ggAATACCGTTGCTGTCAACTTCACCATAAACTTTCGGGCAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAg < 2:171136/140‑1 (MQ=255) aCCGTTGCTGTCGACATCACCATAAGCTTCCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAgcggcg < 1:285520/140‑1 (MQ=255) cGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCa > 2:547639/1‑140 (MQ=255) tGCTGTCGACTTCACCATAAACATTCGGGAAGTTGACGTTGTTAGCGGTACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCAGcc < 2:221637/140‑1 (MQ=255) tGCTGTCGACTTCACAATAAACTTTCGGGAAGTTGCCTTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCAGcc < 1:224029/140‑1 (MQ=255) cGACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTa < 2:612534/140‑1 (MQ=255) gACTTCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTAc > 2:151845/1‑140 (MQ=255) ttCACCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTGCACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCgg > 2:130490/1‑139 (MQ=255) aCCATAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGa < 2:557780/140‑1 (MQ=255) ccATAAACTTTCGGGTAGTTGCCGTCGTTTGCGGCACTTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGAt < 1:198858/140‑1 (MQ=255) ccATAAACTTTCGGGCAGTTGCCGTCGTTTGCGGCACATACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGAt < 1:183767/140‑1 (MQ=255) ccATAAACTTTCGGGCAGTTGCAGTCGTTAGCGGCACTTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGAt < 1:280052/140‑1 (MQ=255) aTAAACTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAg < 1:604626/140‑1 (MQ=255) aaaCTTTCGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAACGCGGTGAAGGCAGAAATCAGCGGCGTAGCCCAGTTACCGAGGATAGtt > 2:261725/1‑140 (MQ=255) cGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGTATGCAGAACCCAGCCGCGCAGCCCAATTACGGAGGATAGGTGAAGCAc > 2:306097/1‑140 (MQ=255) cGGGAAGTTGCCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCAc < 1:46934/140‑1 (MQ=255) cGGGAAGTTGCCGTCCTTAGCGCCAAGTATACCTGCCGGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCAc < 1:221517/140‑1 (MQ=255) | GTCAGATGCTTTACCACCGGCAGAGTTCATCAGAGTGATAAGGATCATCAGGGCAGTCATTTTCACTGCAGCCAGCAGCAGACCTTTTTTCGGAATACCGTTGCTGTCGACTTCACCATAAACTTTCGGGAAGTTACCGTCGTTAGCGGCACGTACACCTGCCTGGCCTACCAACATCATCCAGGAGCCCAGAGAAGTCAGGCACGCAAAGGCGGTGAATGCAGAAACCAGCGGCGCAGCCCAGTTACCGAGGATAGTTGAAGCAC > NC_000913/4358985‑4359250 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |