Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 4,565,730 | T→C | T41A (ACC→GCC) | yjiM ← | putative dehydratase subunit |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,565,730 | 0 | T | C | 98.4% | 207.1 / NA | 61 | T41A (ACC→GCC) | yjiM | putative dehydratase subunit |
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (31/29); total (31/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.92e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGTAGCTGCTTTTAATCAGCGGGCAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGTGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCG > NC_000913/4565595‑4565865 | cGTAGCTGCTTTTAATCAGCGGGCAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACAGGCTGCCTTCGAGATCTCTTGCGGCATAAAGGCGCAg > 1:300033/1‑140 (MQ=255) gTAGCTGCTTTTAATCAGCGGGCAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGt < 1:76729/140‑1 (MQ=255) ctTTTAATCAGCGGGCAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGcc > 1:2412/1‑140 (MQ=255) ttttAATCAGCGGGCAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGCGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCCGGAGCTCTTGCGGCATAAAGGCGCAGTAAGTGCCa > 1:34230/1‑140 (MQ=255) aaTCAGCGGGCAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCa < 1:2338/140‑1 (MQ=255) cAGCGGGCAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCg < 2:102488/140‑1 (MQ=255) gagGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCcgc < 2:8079/140‑1 (MQ=255) agGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCcgcg < 1:563539/140‑1 (MQ=255) agGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCcgcg < 2:131748/140‑1 (MQ=255) ggTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCgcgc < 1:126685/140‑1 (MQ=255) gcgcGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCt > 1:129592/1‑140 (MQ=255) cgcgGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTACGTGACAGCCAGCGAAATGCCGCGCTCCtt > 1:247976/1‑140 (MQ=255) cgcgGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCtt > 1:126392/1‑140 (MQ=255) cgcgGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCtt > 2:17563/1‑140 (MQ=255) gcgGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTg < 1:529527/140‑1 (MQ=255) gcgGCAGATCTTTCTCCCCTTCGTCAATGGTGTCAGCAGTGGTGGAACTGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTg < 2:235319/140‑1 (MQ=255) gcgGCAGACCTTTCTCTACTTCTTCAATGGATTTATCAGAGGTGGAACCGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTg < 2:325081/140‑1 (MQ=255) ggCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTgag < 2:109953/140‑1 (MQ=255) ggCAGATCTTTCTCCGCATCTTCAATGGTTTTATCCGAGATGGAACAGGGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTgag < 2:247976/140‑1 (MQ=255) gCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTgaga > 1:139865/1‑140 (MQ=255) tcCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCAt < 2:120079/134‑1 (MQ=255) tcCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCAt > 1:120079/1‑134 (MQ=255) gCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTgag > 1:142894/1‑140 (MQ=255) cttcttCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTgaga > 2:392981/1‑140 (MQ=255) cttcttCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAACGGAATGGCGCTCTTCTTGAGATCCATGACGGTgaga > 1:245476/1‑140 (MQ=255) cttcAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAg > 1:120957/1‑140 (MQ=255) ttcAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGc > 2:565661/1‑140 (MQ=255) ttCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGc < 2:129592/140‑1 (MQ=255) ttCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGc > 1:150066/1‑140 (MQ=255) tcatcaGAGGTGGAACATAGCGCAACCACAATCGCGCCGACTGCCATCCGGATCTCTTACGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCg < 2:225249/140‑1 (MQ=255) atcaGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAg < 2:150066/140‑1 (MQ=255) atcaGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAg < 2:407298/140‑1 (MQ=255) atcaGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAg < 2:139865/140‑1 (MQ=255) caGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCt < 2:667586/140‑1 (MQ=255) agGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCa > 2:543521/1‑140 (MQ=255) gTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCaga > 1:642818/1‑140 (MQ=255) ggAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAgaga < 1:515086/140‑1 (MQ=255) gAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGaa > 2:138583/1‑140 (MQ=255) gAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGaa > 2:10496/1‑140 (MQ=255) gagCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGAt > 1:478374/1‑140 (MQ=255) agCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATc > 1:44441/1‑140 (MQ=255) agCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATc > 1:143085/1‑140 (MQ=255) gCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGGTCCATGACAGTGAGAATGCCTGTCTCGCGAACTTCAGAGAACTGATCg > 2:195069/1‑140 (MQ=255) gCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCg > 1:333358/1‑140 (MQ=255) gCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCg > 1:34774/1‑140 (MQ=255) gCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCg > 2:148941/1‑140 (MQ=255) acaACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGCGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGc < 2:359928/140‑1 (MQ=255) ccGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGt < 1:74092/140‑1 (MQ=255) cACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAGAAGGGCGGGTTGa > 2:615145/1‑140 (MQ=255) cACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGa > 1:518306/1‑140 (MQ=255) cACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGa < 2:333358/140‑1 (MQ=255) cACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGa > 2:359348/1‑140 (MQ=255) gCTGCCATCGGGATCTGTTGCGTCATAAAGGTGTATTAACTGCCAACCCGCGGAATGCCGCGCTCCTTGAGATCCATGACTGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGt < 2:305696/140‑1 (MQ=255) gCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGt < 1:615145/140‑1 (MQ=255) gCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGAGCGAAAATGGCGGGTAGATCggg > 2:241617/1‑139 (MQ=255) gCTGCCATCGGGATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCCAGCATCATAGAACTGAGCGAATATGGCGGGTAgtgcggg > 2:303935/1‑134 (MQ=255) tCGGGATCTCTTGCGGCATAAAAGCGCAGTAAGTGCCCACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGt < 1:303935/140‑1 (MQ=255) gggATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGa < 2:555475/140‑1 (MQ=255) ggATCTCTTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGAc < 2:518306/140‑1 (MQ=255) ctctTGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGa < 1:392981/140‑1 (MQ=255) ctTGCGGCATAAAGGCGCAGTACGTCCCATCCAGCGGTATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGAtt < 1:195069/140‑1 (MQ=255) ttGCGGCATAAAGGCGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCTAAAATGGGGGGGAGGTCGGTGAGAAGGGACATGAttt > 1:238795/1‑140 (MQ=255) aaaGGCGCAGTAAGTGCCAACCTGCGGAATGCCGCTCTCTTTGAGAT‑CGTGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCg < 2:227856/140‑1 (MQ=255) | CGTAGCTGCTTTTAATCAGCGGGCAGAGGTTGCGCGGCAGATCTTTCTCCGCTTCTTCAATGGTTTCATCAGAGGTGGAACAGAGCGAAACCACAACCGCACCGGCTGCCATCGGGATCTCTTGCGGCATAAAGGTGCAGTAAGTGCCAACCAGCGGAATGCCGCGCTCCTTGAGATCCATGACGGTGAGAAAGCCTGTCTGGCGAGCTTCAGAGAACTGATCGAAAATGGCGGGTAGATCGGTGACAAGTGACATGATTTTCCTTCCCCG > NC_000913/4565595‑4565865 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |