| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 545,990 | T→C | Q125R (CAG→CGG) | allD ← | ureidoglycolate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 545,990 | 0 | T | C | 97.7% | 148.2 / NA | 44 | Q125R (CAG→CGG) | allD | ureidoglycolate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (22/21); minor base A (1/0); total (23/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGATCTCGTCGCCTTCTCCCGGCGCGGCAAAGGCCAGGGGGTTAGTACCGTAGTAAATTTCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCTGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCATTTTCGCCGCGACCTGTCCGGCGGCATTGTC > NC_000913/545853‑546120 | ggATCTCGTCGCCTTCTCCCGGCGCGGCAAAGGCCAGGGGGTTAGTACCGTAGTAAATTTCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCtgccgc > 2:576320/1‑140 (MQ=255) gATCTCGTCGCCTTCTCCCGGCGCGGCAAAGGCCAGGGGGTTAGTACCGTAGTAAATTTCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGca < 1:332973/140‑1 (MQ=255) tctcGTCGCCTTCTCCCGGCGCGGCAAAGGCCAGGGGGTTAGTACCGTAGTAAATTTCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGcaca < 2:83045/140‑1 (MQ=255) ccTTCTCCCGGCGCGGCAAAGGCCAGGGGGTTAGTACCGTAGTAAATTTCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAaga > 2:605942/1‑140 (MQ=255) ccTTCTCCCGGCGCGGCAAAGGCCAGGGGGTTAGTACCGTAGTAAATTTCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAaga > 1:23793/1‑140 (MQ=255) cTTCTCCCGGCGCGGCAAAGGCCAGGGGGTTAGTACCGTAGTAAATTTCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATAGAAATGCCCATGAATCGGGCGCGGGCTGCCGGCCGCACAAAATAagag > 2:261492/1‑140 (MQ=255) ttCTCCCGGCGCGGCAAAGGCCAGGGGGTTAGTACCGTAGTAAATTTCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGAGCAGCCTGCAGCACAAAATAAgaga > 1:260287/1‑140 (MQ=255) gCCAGGGGGTTAGTACCGTAGTAAATTTCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCAt < 1:646516/140‑1 (MQ=255) gCCAGGGGGTTAGTACCGTAGTAAATTTCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCAt < 1:480960/140‑1 (MQ=255) ggggTTAGTACCGTAGTGAATTGCCGCGCCGCCAAACGGGACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGc < 2:260287/140‑1 (MQ=255) ggggTTAGTACCGTAGTAAATTTCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGc < 1:36793/140‑1 (MQ=255) tAGTACCGTAGTAAATTTCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCGTGCCGCACGAAATAAGAGATTGCGCAGCTGGGACCCATCCGGCTGATa > 2:227975/1‑140 (MQ=255) tAGTACCGTAGTAAATTTCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATa > 2:47621/1‑140 (MQ=255) gtagtaAATTTCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCTacca > 1:609352/1‑140 (MQ=255) tagtaAATTTCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGaccac > 2:123815/1‑140 (MQ=255) tagtaAATTTCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGaccac < 1:605942/140‑1 (MQ=255) tagtaAATTTCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGaccac > 1:165760/1‑140 (MQ=255) taAATTTCCGCGCCGCCAAACGCCATCACTATTGGATCGGGCTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACcgccgc < 1:194671/140‑1 (MQ=255) ttCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAGATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGc > 2:52560/1‑140 (MQ=255) ccGCGCCGCCAAACGCCACCACCATTGGACCGGACTGCCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCa < 1:188362/140‑1 (MQ=255) cgcgCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTCTGACCCATCCGACTGATACCGACCACCGCAACGCCAt > 1:328206/1‑140 (MQ=255) cgccgcCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATCGCGCCGCTCTGATCCACCCGGCTGAAACCGGCCACCGCAACGCCAttt > 2:208971/1‑140 (MQ=255) cgccgcCAAACGGCACCACCATTGGATCGGAC‑GGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCAtttt > 2:83979/1‑140 (MQ=255) aaaCGGCACCACCATTGGATCGGACTGGCACTTCGAAATTCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTggg < 2:240608/140‑1 (MQ=255) aaaCGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCTACCGCCGCAACGCCATTTTGCTggg < 2:609352/140‑1 (MQ=255) aaCGGCACCACCATTCGATCGGTCTCGCACATCGAAACGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATCTTGCTGGGc < 1:200445/140‑1 (MQ=255) accaccATTGGATCGGAC‑GGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTg < 1:83979/140‑1 (MQ=255) ccaccaTTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTg < 2:547353/140‑1 (MQ=255) ccaTTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACGGACCACCGCAATGCGATTTTGATGGGCGGTTTTGATg > 1:169682/1‑140 (MQ=255) aTTGGATCGGACTGGCATATCGAAATGCCAATGAATCCGTCGCGGGCTACCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGc < 2:285617/140‑1 (MQ=255) aTTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCATAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGc < 1:620243/140‑1 (MQ=255) tGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCAt < 1:47621/140‑1 (MQ=255) tGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCAt > 2:357751/1‑140 (MQ=255) tGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCAACGCGACGCCATTTTGCTGGGCGGTTTTGATGGCAt > 2:229914/1‑140 (MQ=255) gACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCAt > 1:118895/1‑140 (MQ=255) gACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCAt > 1:450722/1‑140 (MQ=255) gACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCAt > 2:593684/1‑140 (MQ=255) gCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCa > 2:390754/1‑140 (MQ=255) ccAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATCAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCATTTTCGCCGCGAc < 1:261492/140‑1 (MQ=255) ccAATGAATCCGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCATTTTCGCCGCGAc < 1:97323/140‑1 (MQ=255) cGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCTGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCATTTTCGCCGCGACCTGTCcggcg < 2:118895/140‑1 (MQ=255) cGGCGCGGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCATTTTCGCCGCGACCTGTCcggcg > 1:59373/1‑140 (MQ=255) cgGGCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTGGATGGCATGTTCGATACCCATTTTCCCCGCAACCTGTCCGGCGGCAtt > 2:222106/1‑140 (MQ=255) ggCTGCCTGCCGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCATTTTCGCCGCGACCTGTCCGGCGGCATTGt > 2:537216/1‑140 (MQ=255) gCTGCCTGCCGCACACAATAAGGGACTGCCCCGCTGTAACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCATTTTCGCCGCGACCTGTCCGGCGGCATTGTc < 1:247431/140‑1 (MQ=255) | GGATCTCGTCGCCTTCTCCCGGCGCGGCAAAGGCCAGGGGGTTAGTACCGTAGTAAATTTCCGCGCCGCCAAACGGCACCACCATTGGATCGGACTGGCACATCGAAATGCCAATGAATCCGGCGCGGGCTGCCTGCTGCACAAAATAAGAGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCATTTTCGCCGCGACCTGTCCGGCGGCATTGTC > NC_000913/545853‑546120 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |