Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 62,681 | A→G | L195P (CTG→CCG) | rapA ← | RNA polymerase‑binding ATPase and RNAP recycling factor |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 62,681 | 0 | A | G | 95.0% | 133.7 / NA | 40 | L195P (CTG→CCG) | rapA | RNA polymerase‑binding ATPase and RNAP recycling factor |
Reads supporting (aligned to +/- strand): ref base A (2/0); new base G (23/15); total (25/15) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.19e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGCTGAGCTTCGGCATAACGCTCATCATCAAATAGCGCAAAGCGCAGGTTGAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGAGCAGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTAC > NC_000913/62546‑62813 | tGCTGAGCTTCGGCATAACGCTCATCATCAAATAGCGCAAAGCGCAGGTTGAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTg < 1:440619/140‑1 (MQ=255) aGCTTCGGCATAACGCTCATCATCAAATAGCGCAAAGCGCAGGTTGAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGAt > 1:124896/1‑140 (MQ=255) cGGCATAACGCTCATCATCAAATAGCGCAAAGCGCAGGTTGAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAgg > 2:76189/1‑140 (MQ=255) gCATAACGCTCATCATCAAATAGCGCAAAGCGCAGGTTGAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGat > 1:587218/1‑140 (MQ=255) tAGCGCAAAGCGCAGGTCGAAACGGCGCAGCTTTTATACTAGCCACTGTTGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGttt < 2:197140/140‑1 (MQ=255) cgcAAAGCGCAGGTTGAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGGCAGAGGGCAGTTTCTGTTGCAGGATAATCCTGGCTTCAATGGTTTTcc > 2:171633/1‑140 (MQ=255) cgcAAAGCGCAGGTTGAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGGCAGAGGGCAGTTGCTGGTGCAGGATAATCCTGGCTTCAATGGTTTTcc > 2:206000/1‑140 (MQ=255) cgcAAAGCGCAGGTTGAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGTATTATCCCGGCTTCAATGGTTTTcc > 1:197140/1‑140 (MQ=255) cgcAAAGCGCAGGTTGAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTcc > 1:427328/1‑140 (MQ=255) cgcAAAGCGCAGGTTGAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTcc > 1:517183/1‑140 (MQ=255) cgcAAAGCGCAGGTTGAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTcc > 2:144850/1‑140 (MQ=255) cgcAAAGCGCAGGTTGAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTcc > 2:4201/1‑140 (MQ=255) cgcAAAGCGCAGGTTGAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTcc > 2:104046/1‑140 (MQ=255) cgcAAAGCGCAGGTTGAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGATGCTGATGCAGAATAATCCCGGCTTCAATGGTTTTcc > 1:328376/1‑140 (MQ=255) cgcAAAGCGCAGGTTGAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGATGCTGATACAGGATGATCCCGTCTTCAATGGTTTTcc > 1:297912/1‑140 (MQ=255) cAAAGCGCAGGTTGAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCt > 1:465965/1‑140 (MQ=255) cAGGTTGAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACTCa < 2:427328/140‑1 (MQ=255) gAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGt < 2:517183/140‑1 (MQ=255) aaaCGGCGTAGCATTTCCACCAGCCACTGAGTCCGTAAGATTTCCGGGGCGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTc < 2:328376/140‑1 (MQ=255) cgcAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTcagccag > 1:565868/1‑140 (MQ=255) gCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACgcgcggcgcg < 2:417297/140‑1 (MQ=255) tGATGCTGTAAGGTTTCTGGGAGGATAATTAGCACGCGTGCAGCAGCGGCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTggcg < 2:237624/140‑1 (MQ=255) tGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTggcg < 2:565868/140‑1 (MQ=255) aTGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTggcggc < 2:587218/140‑1 (MQ=255) tGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATTCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGAcc > 1:494150/1‑140 (MQ=255) aGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTTAGCCAGCAGGAAGCGCGGCGCATGGCGGCGACCAAca > 1:264586/1‑140 (MQ=255) tCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATg > 2:412134/1‑140 (MQ=255) ccGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGa > 1:97429/1‑140 (MQ=255) aCGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCTAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGAt > 1:130392/1‑140 (MQ=255) cGATAATTAGCACACGTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATg > 1:542302/1‑140 (MQ=255) gTTCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCggg > 2:167517/1‑140 (MQ=255) ttCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCCAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGa < 2:386505/140‑1 (MQ=255) tCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGAt < 2:124896/140‑1 (MQ=255) tCAGCAGCGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGAt < 1:638508/140‑1 (MQ=255) agcagcGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCa < 1:76189/140‑1 (MQ=255) agcagcGCCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCa > 2:637082/1‑140 (MQ=255) gcCAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTgg > 2:113262/1‑140 (MQ=255) ccAGAGGGCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGt > 1:465527/1‑140 (MQ=255) agagggCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTAc < 2:464244/140‑1 (MQ=255) agagggCGGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTAc < 2:576939/140‑1 (MQ=255) | TGCTGAGCTTCGGCATAACGCTCATCATCAAATAGCGCAAAGCGCAGGTTGAAACGGCGCAGCATTTCTACCAGCCACTGATGCTGTAAGGTTTCCGGGACGATAATTAGCACACGTTCAGCAGCGCCAGAGAGCAGTTGCTGATGCAGGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTAC > NC_000913/62546‑62813 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |