| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,632,303 | (T)6→5 | intergenic (‑18/‑587) | ydfJ ← / → ynfT | putative transporter YdfJ/Qin prophage; protein YnfT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,632,298 | 0 | T | . | 95.7% | 171.2 / 2.7 | 46 | intergenic (‑13/‑592) | ydfJ/ynfT | putative transporter YdfJ/Qin prophage; protein YnfT |
| Reads supporting (aligned to +/- strand): ref base T (2/0); new base . (22/22); total (24/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.90e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.69e-01 | |||||||||||
TACGCGCCACATAACCTGCACCGTAGGTTCCCATTGCCAGAATTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTGTTTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATCCTAAGTTCGATCTCAGTGTCTATCTGGGGCCTATTTCTGTCCCATATATGCCCCAAAAAAACT > NC_000913/1632159‑1632433 | tACGTGCCACATAACCTGCACCGTAGGTTCCCATTGCCAGAATTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGgtgt < 2:726643/140‑1 (MQ=255) gcCACATAGCCTGCACTTTAGGCTCCCATTTCCTGTATTAACGCCATTTCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTGtttttc < 2:401086/140‑2 (MQ=255) gcCACATAACCTGCACCGTAGGTTCCCATTGTCAGCATTGACGCCATTTCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTGtttttc < 2:315469/140‑2 (MQ=255) cacaTAACCTGCACCGTAGGTTCCCATTGCCAGAATTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTGTTTTTccc > 2:826934/1‑140 (MQ=255) cacaTAACCTGCACCGTAGGTTCCCATTGCCAGAATTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTGTTTTTccc > 2:650755/1‑140 (MQ=255) gCACCGTAGGTTCCCATTGCCAGAATTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGt > 2:515322/1‑140 (MQ=255) aCCGTAGGTTCCCATTGCCAGAATTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGttt > 2:735046/1‑140 (MQ=255) aCCGTAGGTTCCCATTGCCAGAATTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGttt > 1:12504/1‑140 (MQ=255) tAGGTTCCCATTGCCAGAATTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCtt > 1:673271/1‑140 (MQ=255) tAGGTTCCCATTGCCAGAATTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCtt > 1:739767/1‑140 (MQ=255) tAGGTTCCCATTGCCAGAATTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCtt > 1:432271/1‑140 (MQ=255) aGGTTCCCATTGCCAGAATTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTg > 2:539165/1‑140 (MQ=255) ggTTCCCATTGCCAGAATTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTgg < 1:735046/140‑1 (MQ=255) cATTGCCAGAATTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAAACCATAATTAACAAGTG‑TTTTTCCCAACCTGAGGTTTCCTTGGCGtttt > 2:379461/1‑140 (MQ=255) cAGAATTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGt > 1:448020/1‑140 (MQ=255) aaTTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGAG‑TTTCTCCCATCATGTAGTCTCCTTGGCGTTTTCTAGGtttt > 1:393623/1‑140 (MQ=255) aCGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGATTTTTTCAg > 2:502225/1‑140 (MQ=255) aTTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGt > 2:795897/1‑140 (MQ=255) tGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTg > 2:165433/1‑140 (MQ=255) gTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCAtt > 2:460879/1‑140 (MQ=255) atTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTaa < 2:448020/140‑1 (MQ=255) ttCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTaaa < 1:826934/140‑1 (MQ=255) ttCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTaaa > 1:377049/1‑140 (MQ=255) tCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTaaaa < 1:795897/140‑1 (MQ=255) cAGGAAAAAATATTTCTTGAAAGACTAACGCCGCGTCGAGCGAATATATCTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTAGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTaaaaa < 2:414545/140‑1 (MQ=255) cAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTaaaaa > 2:236171/1‑140 (MQ=255) aGGAAAAAATATTTCATGAAACTCTGACGGTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAg < 1:379461/140‑1 (MQ=255) aGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAg < 1:650755/140‑1 (MQ=255) aGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAg < 1:142787/140‑1 (MQ=255) aGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAg < 2:12504/140‑1 (MQ=255) aaaaTATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATcc < 2:673271/140‑1 (MQ=255) aaTATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATCCTa < 1:165433/140‑1 (MQ=255) tatTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATCCTAAg < 1:502225/140‑1 (MQ=255) cATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTaaaaa < 1:49601/125‑1 (MQ=255) cATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTaaaaa > 2:49601/1‑125 (MQ=255) aTGAAACACTAACGCTGTGCCGCGCGAATATAACTTGAAGTCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATCCTAAGTTAGAt < 2:322511/140‑1 (MQ=255) gAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATCCTAAGTTCGAtct < 2:504127/140‑1 (MQ=255) gAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATCCTAAGTTCGAtct < 1:167173/140‑1 (MQ=255) acTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATCCTAAGTTCGATCTCAgtg > 2:458274/1‑140 (MQ=255) tAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATCCTAAGTTCGATCTCAGTGTc < 1:539165/140‑1 (MQ=255) cgcCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATCCTAAGTTCGATCTCa < 1:475064/127‑1 (MQ=255) cgcCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATCCTAAGTTCGATCTCa > 2:475064/1‑127 (MQ=255) gcCGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATCCTAAGTTCGATCTCAGTGTCTATCTgggg < 1:460344/140‑1 (MQ=255) ccGAGCGAATATAACTGAAAATCCATAATTCCCAGTTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATCCTAAGTTCGATCTCAGTGTCTATCTGGGGc < 2:377049/140‑1 (MQ=255) cGAGCGAATATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATCCTAAGTTCGATCTCAGTGTCTATCTGGGGcc < 1:730514/140‑1 (MQ=255) aaTATAACTGGAAATCCATAATTCACAGGTG‑TTTTTCTCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATCCTAAGTTCGATCTCAGTGTCTATCTGGGGCCTATTTc < 1:236171/140‑1 (MQ=255) gAAATCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATCCTAAGTTCGATCTCAGTGTCTATCTGGGGCCTATTTCTGTCCCatat > 2:535062/1‑140 (MQ=255) aaaTCCATAATTCACAGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATCCTAAGTTCGATCTCAGTGTCTATCTGGGGCCTATTTCTGTCCCatata > 1:541143/1‑140 (MQ=255) aGGTG‑TTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATCCTAAGTTCGATCTCAGTGTCTATCTGGGGCCTATTTCTGTCCCATATATGCCCCAAAAAAACt > 2:441700/1‑140 (MQ=255) | TACGCGCCACATAACCTGCACCGTAGGTTCCCATTGCCAGAATTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCATAATTCACAGGTGTTTTTTCCCATCCTGTGGTTTCCTTGGCGTTTTCTAGGTTTTTTCAGATAGTTGCATTTTTTTAAAAAGCATCCTAAGTTCGATCTCAGTGTCTATCTGGGGCCTATTTCTGTCCCATATATGCCCCAAAAAAACT > NC_000913/1632159‑1632433 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |