| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,597,313 | (C)7→9 | pseudogene (774/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,597,306 | 1 | . | C | 97.1% | 113.2 / ‑3.2 | 35 | pseudogene (781/5422 nt) | yneO | AIDA‑I family autotransporter YneO |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (19/15); total (20/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
| * | NC_000913 | 1,597,306 | 2 | . | C | 97.1% | 116.0 / ‑3.2 | 35 | pseudogene (781/5422 nt) | yneO | AIDA‑I family autotransporter YneO |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (19/15); total (20/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
TGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAA‑‑CCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGC > NC_000913/1597168‑1597432 || tGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTaaccaa‑‑c < 1:506987/140‑1 (MQ=255) atatTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAA‑‑cccc‑‑cc < 1:499336/140‑1 (MQ=255) gCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAAt > 2:144999/1‑140 (MQ=255) gCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATAGTATTTTGAGCCGTTACCAACGCCCC‑‑CCCTCGCGaca > 1:421453/1‑138 (MQ=255) ccATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATa > 2:619738/1‑140 (MQ=255) ttACCGAAATATCCATTGTAGACTCTGCGTAACGTGATGGCAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTc < 2:294187/140‑1 (MQ=255) aaTATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGACGTAACCAA‑‑CCCCCACCCTCGCGAATAGTCGCCTccc > 1:294187/1‑140 (MQ=255) aaTATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTATCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTccc < 1:84011/140‑1 (MQ=255) tCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAGTAATCCCCCCCCCAgg > 1:196756/1‑139 (MQ=255) tataGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTc > 2:60078/1‑124 (MQ=255) tataGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTc < 1:60078/124‑1 (MQ=255) agTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTccc < 1:205589/126‑1 (MQ=255) agTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTccc > 2:205589/1‑126 (MQ=255) agTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTa > 1:504655/1‑140 (MQ=255) tCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTAcc > 2:430294/1‑140 (MQ=255) tCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTAcc > 1:776620/1‑140 (MQ=255) tGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTTGCATCCCCATTTCCTTGATTACCaa > 1:418249/1‑140 (MQ=255) tGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCaa > 2:125156/1‑140 (MQ=255) tGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCaa > 1:513965/1‑140 (MQ=255) aCAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAAtt > 2:646735/1‑140 (MQ=255) gagTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAg < 2:739311/140‑1 (MQ=255) gCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTAtttt > 1:171883/1‑140 (MQ=255) gCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTAtttt > 2:29987/1‑140 (MQ=255) acaTTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTAtttttt > 2:568079/1‑140 (MQ=255) aTTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTttat < 2:776620/140‑1 (MQ=255) tCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTGCCCAGTTCCTTGATTACCAATTTGCAATTCAATTGCGGAATCATTATTTTttattt > 2:185002/1‑139 (MQ=255) tCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTttatta > 2:69224/1‑140 (MQ=255) tCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTACTTGATTACCAAGTTGAAATTCAATCGAGGAATCATTATTTTttatta > 2:280004/1‑140 (MQ=255) ggTTCCGAAACCGGTGGCATTGACACCGATAGTGGAATTTTCAGCCGTGACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTGCCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCa < 2:418249/140‑1 (MQ=255) gTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCAc > 2:521578/1‑140 (MQ=255) gTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCttt < 1:44367/140‑1 (MQ=255) ttGCCACCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACg < 1:521578/140‑1 (MQ=255) aCCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAAc < 2:171883/140‑1 (MQ=255) aCCGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAAc < 1:87685/140‑1 (MQ=255) cGATAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCt < 1:843402/140‑1 (MQ=255) aTAATCGTATTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTgg < 2:504655/140‑1 (MQ=255) gtttttcCAGCGTTAACAAC‑‑CCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACt < 1:534613/137‑1 (MQ=255) tttttCAGTCGTAACCGACCCCCC‑‑CCCTCCTCATTCGTCGCCTCCCCATTTCCTTGATTACCAACTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCTCCCTTTTCAACGACAACCTGGCCATTACt < 2:421453/139‑1 (MQ=255) aTTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACt < 1:619738/140‑1 (MQ=255) aTTTTCAGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACt < 1:646735/140‑1 (MQ=255) aGCCGTAACCAACCCCCC‑‑CCCTCGCGAATAGTCGCCGCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTCTTTATTAGCCACTCGCCACCCTTTTCAACGCCAACCTCCCCATTACTGCCCGc > 2:195606/1‑140 (MQ=255) || TGGAAATATTGACTGTGCCATTACCGAAATATCCATTATAGAGTCTGCGTACCGTGATGACAGAGTCTTGATCCTGCACATTCAGGGTTCCGATACCGGTGGCATTGCCACCGATAATCGTATTTTCAGCCGTAACCAA‑‑CCCC‑‑CCCTCGCGAATAGTCGCCTCCCCAGTTCCTTGATTACCAATTTGAAATTCAATTGAGGAATCATTATTTTTTATTAGCCACTCGCCACCCTTTTCAACGACAACCTGGCCATTACTGCCCGC > NC_000913/1597168‑1597432 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |