| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,901,848 | (C)5→6 | coding (1257/1278 nt) | yqcE → | putative transport protein YqcE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,901,843 | 1 | . | C | 95.5% | 147.2 / ‑0.1 | 44 | coding (1252/1278 nt) | yqcE | putative transport protein YqcE |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base C (19/23); total (20/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.14e-01 | |||||||||||
CCCAATTATCGGCCACTGGCAAGACACCCTGCCCGCTGCAGAAGCCTACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCG‑CCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATGGCGGAAGTCAGAGCACAAAAGTGGTGATGTACGATCTGGA > NC_000913/2901704‑2901966 | cccAATTATCGGCCACTGGCAAGACACCCTGCCCGCTGCAGAAGCCTACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAgcg > 1:75800/1‑140 (MQ=255) ttATCGGCCACTGGCAAGACACCCTGCCCGCTGCAGAAGCCTACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTAGCTGTTCAAAAGAAGTCGTACGGCTGATAGCG‑ccccc > 1:267496/1‑140 (MQ=255) cGGCCACTGGCAAGACACCCTGCCCGCTGCAGAAGCCTACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCG‑ccccccgca < 1:538619/140‑5 (MQ=255) cTGGCAAGACACCCTGCCCGCTGCAGAAGCCTACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTCCCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCt > 2:808674/1‑140 (MQ=255) cTGGCAAGACACCCTGCCCGCTGCAGAAGCCTACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCt < 1:118316/140‑1 (MQ=255) cTGGCAAGACACCCTGCCCGCTGCAGAAGCCTACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCt > 2:118316/1‑140 (MQ=255) cTGGCAAGACACCCTGCCCGCTGCAGAAGCCTACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCt < 1:740995/140‑1 (MQ=255) cTGGCAAGACACCCTGCCCGCTGCAGAAGCCTACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCG‑ccccccgca > 2:40335/1‑130 (MQ=255) cTGGCAAGACACCCTGCCCGCTGCAGAAGCCTACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCG‑ccccccgca < 1:40335/134‑5 (MQ=255) cAAGACACCCTGCCCGCTGCAGAAGCCTACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTagca < 2:812025/140‑1 (MQ=255) aGACACCCTGCCCGCTGCAGAAGCCTACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTagcagc < 1:590004/140‑1 (MQ=255) cccTGCCCGCTGCAGAAGCCTACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCG‑CCCCCGCAATGGCTAGCAGCAAGTaa > 1:810922/1‑140 (MQ=255) cTGCCCGCTGCAGAAGCCTACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAg > 2:135549/1‑140 (MQ=255) tGCCCGCTGCAGAAGCCTACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCG‑CCCCCGCAATGGCTAGCAGCAAGTAAGcc < 2:810922/140‑1 (MQ=255) cTGCAGAAGCCTACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGaa < 1:54145/140‑1 (MQ=255) gAAGCCTACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTa < 1:135549/140‑1 (MQ=255) tACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTCCCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGgag < 1:808674/140‑1 (MQ=255) gCTGATGGGCATGGCGGCTCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGa < 1:213232/140‑1 (MQ=255) cTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGaa > 1:34311/1‑140 (MQ=255) tGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGaaa > 1:442372/1‑140 (MQ=255) aTGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTCGCAGCAAGTAAGGCAGACAAATTACCGGAGTTAAATCATTTCGaaaaa > 2:402855/1‑140 (MQ=255) aTGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGaaaaa > 2:713333/1‑140 (MQ=255) gggCTTGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAAt > 1:116427/1‑140 (MQ=255) gggCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAAt > 2:427375/1‑140 (MQ=255) ggCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATa < 2:580271/140‑1 (MQ=255) gCATGGCGGCGCTTGACATGGTCATCGTCGTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATAc < 1:402855/140‑1 (MQ=255) ggcggcGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATAcatca < 2:31851/140‑1 (MQ=255) ggcggcGCTTGGCATGGTGATTCTCTTTACCTTTTCGCTATTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATAcatca < 2:267496/140‑1 (MQ=255) ggCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGa < 2:741447/140‑1 (MQ=255) aTGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGAAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATgg < 1:580420/140‑1 (MQ=255) ttGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATGGCGGAAGt > 2:811281/1‑140 (MQ=255) tGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATGGCGGAAGTc > 1:606102/1‑140 (MQ=255) tttACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATGGCGGAAGTCagag < 1:427375/140‑1 (MQ=255) tACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATGGCGGAAGTCAGAGca > 1:106588/1‑140 (MQ=255) cTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATGGCGGAAGTCAGAGCACaa < 1:638840/140‑1 (MQ=255) tttGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATGGCGGAAGTGAGAGCACAAAAg > 2:544360/1‑140 (MQ=255) tttGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATGGCGGAAGTCAGAGCACAAAAg < 2:606102/140‑1 (MQ=255) tttGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATGGCGGAAGTCAGAGCACAAAAg > 1:560702/1‑140 (MQ=255) tttGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATAAATCATAGGGATGGAGGGCGGAAGTCAGAGCACAAAAg > 1:232546/1‑140 (MQ=255) tttGCTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATAAATCATAGGGATCGAAGGCGGAAGTCAGAGCACAAAAg > 1:416863/1‑140 (MQ=255) cTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATGGCGGAAGTCa > 2:52547/1‑125 (MQ=255) cTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATGGCGGAAGTCa < 1:52547/125‑1 (MQ=255) cTGTTCCAAAAAATTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATGGCGGAAGTCAGAGCACAAAAgtggt < 1:713333/140‑1 (MQ=255) aaaaaTTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATGGCGGAAGTCAGAGCACAAAAGTGGTGATGTACg < 1:811281/140‑1 (MQ=255) aaaaaTTCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATGGCGGAAGTCAGAGCACAAAAGTGGTGATGTACg < 2:560702/140‑1 (MQ=255) ttCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATGGCGGAAGTCAGAGCACAAAAGTGGTGATGTACGATCTg > 1:115389/1‑140 (MQ=255) ttCGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGAGGGCAGAAGTCAGAGCAGAAAAATGGTGATGTACGATCTg > 2:308811/1‑140 (MQ=255) cGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATGGCGGAAGTCAGAGCACAAAAGTGGTGATGTACGATCTGGa < 2:106588/140‑1 (MQ=255) cGTACTGCTGATAGCGCCCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATGGCGGAAGTCAGAGCACAAAAGTGGTGATGTACGATCTGGa < 2:75800/140‑1 (MQ=255) | CCCAATTATCGGCCACTGGCAAGACACCCTGCCCGCTGCAGAAGCCTACCGCAATATGTGGCTGATGGGCATGGCGGCGCTTGGCATGGTGATTGTCTTTACCTTTTTGCTGTTCCAAAAAATTCGTACTGCTGATAGCG‑CCCCCGCAATGGCTAGCAGCAAGTAAGCCAGGAAAATTACAGGAGAAAAATCATGTCGAAAAAATACATCATAGGGATTGATGGCGGAAGTCAGAGCACAAAAGTGGTGATGTACGATCTGGA > NC_000913/2901704‑2901966 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |