Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 310,057 | (G)6→7 | intergenic (‑31/+27) | ecpB ← / ← ecpA | putative fimbrial chaperone EcpB/common pilus major subunit |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 310,051 | 1 | . | G | 96.3% | 185.9 / ‑0.4 | 55 | intergenic (‑25/+33) | ecpB/ecpA | putative fimbrial chaperone EcpB/common pilus major subunit |
Reads supporting (aligned to +/- strand): ref base . (2/0); new base G (23/29); total (25/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.10e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTCAGCGTGCTGCTGTCACTGTTCATAAACGATGATATATCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑A‑‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGG > NC_000913/309914‑310184 | cTCAGCGTGCTGCTGTCACTGTTCATAAACGATGATATATCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑A‑‑gg < 1:821141/140‑1 (MQ=255) tCAGCGTGCTGCTGTCACTGTTCATAAACGATGATATATCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑A‑‑ggg < 1:21472/140‑1 (MQ=255) aGCGTGCTGCTGTCACTGTTCATAAACGATGATATATCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑A‑‑gggg‑g > 2:199947/1‑140 (MQ=255) cGTGCTGCTGTCACTGTTCATAAACGATGATATATCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑A‑‑g > 2:824674/1‑134 (MQ=255) cGTGCTGCTGTCACTGTTCATAAACGATGATATATCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑A‑‑g < 1:824674/134‑1 (MQ=255) tgTCACTGTTCATAAACTATGATATATCGCCCACACCCATCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCct < 2:257651/140‑1 (MQ=255) tCACTGTTCATAAACGATGATATATCGCCGACATCCGGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAATAATGCGGGGCAGGAATGAAGCAA‑‑GGGG‑GGCCACCCctgc > 2:415409/1‑140 (MQ=255) tCACTGTTCATAAACGATGATATATCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCctgc < 1:108962/140‑1 (MQ=255) tCACTGTTCATAAACGATGATATATCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCctgc > 2:619468/1‑140 (MQ=255) aCTGTTCATAAACGATGATATATCGGCGACATCCGGCCCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCctgctg < 1:415409/140‑1 (MQ=255) aCTGTTCATAAACGATGATATATCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCctgctg < 2:484775/140‑1 (MQ=255) aCTGTTCATAAACGATGATATATCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCctgctg < 2:435103/140‑1 (MQ=255) cTGTTCATAAACGATGATATATCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AGGGGGG‑GGCTACCCctgctg > 1:639638/1‑140 (MQ=255) tCATAAACGATGATATATCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACa > 2:766617/1‑140 (MQ=255) tAAACGATGATATATCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCa > 2:460508/1‑140 (MQ=255) tAAACGATGATATATCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCa < 2:515531/140‑1 (MQ=255) tAAACGATGATATATCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCa > 2:571282/1‑140 (MQ=255) atgatATATCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCaga < 2:120538/136‑1 (MQ=255) atgatATATCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCaga > 1:120538/1‑136 (MQ=255) atgatATATCGCCGACATCCAGAGCCTGGCCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAgagaga < 1:372842/140‑1 (MQ=255) tatatCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACGATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTaa < 1:386088/140‑1 (MQ=255) tatatCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTaa < 1:773975/140‑1 (MQ=255) tatatCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTaa < 1:549874/140‑1 (MQ=255) tatatCGCCGACATCCAGCGCCTGGCCCGGAGATATTTCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTaa < 1:340011/140‑1 (MQ=255) cGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCAATCCCTGCTGTTACAGGAGAGAGATTAACTGGt > 2:372842/1‑140 (MQ=255) ccGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACGATTCCGTCCAGGAATAAAGC‑A‑‑GGGGCGGCCATCCCTGCTGGTACATCAGAGAGATTAACTGGTcc > 2:386088/1‑140 (MQ=255) ccGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTcc > 1:96842/1‑140 (MQ=255) ccGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTcc > 1:503290/1‑140 (MQ=255) gACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAg > 2:488934/1‑140 (MQ=255) cAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTcgcg < 2:657551/140‑1 (MQ=255) cTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAAc < 2:96842/140‑1 (MQ=255) cTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAAc < 1:776785/140‑1 (MQ=255) ggCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGt > 1:528508/1‑140 (MQ=255) ttCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACGTCAGAGAGCTTAACAGGACCAGGTCGCGTCCAACTGTACACTAACGTc > 2:409330/1‑140 (MQ=255) ttCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTc > 2:23071/1‑140 (MQ=255) agcagAGCGAGAGGCAGAAGGTTCTTTTTCATAACGATTGCGTCCAGGTATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGa < 2:231020/140‑1 (MQ=255) cagAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATg < 1:571282/140‑1 (MQ=255) aggagCGAGAGGCAGCAGGTGCATTATCAAAACAATTGCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATg < 1:401882/138‑1 (MQ=255) gagCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGcc < 2:528508/140‑1 (MQ=255) ggCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTa < 1:488934/140‑1 (MQ=255) ggCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTa > 2:196579/1‑140 (MQ=255) cAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTaga < 1:766617/140‑1 (MQ=255) aGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCCCGTCGAACTGTACGCTAGCGTCGCCACTCCAGATGCCTTCCGGTagct > 2:401882/1‑138 (MQ=255) aaGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTg > 1:730664/1‑140 (MQ=255) tGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTa < 1:78291/131‑1 (MQ=255) tGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTa > 2:78291/1‑131 (MQ=255) cTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTaa > 2:539970/1‑140 (MQ=255) ttttCATAACAATTCAGTCCAGCAACAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATc < 1:367533/140‑1 (MQ=255) ttCATAACAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTg > 2:744386/1‑140 (MQ=255) acagaTTCCGTCCAGCAATAAATC‑AC‑GGGA‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACt < 1:265986/136‑1 (MQ=255) aCAATTCCGTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTg < 1:199947/140‑1 (MQ=255) cAATTCCGTCCAGGAATAAAGC‑AGGGGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTg < 2:639638/140‑1 (MQ=255) gTCCAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTa < 1:539970/140‑1 (MQ=255) cccAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACt > 1:773998/2‑130 (MQ=255) cccAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACt < 2:773998/129‑1 (MQ=255) cAGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCa > 1:724516/1‑140 (MQ=255) aGGAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCAt < 1:619468/140‑1 (MQ=255) ggAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCAtt < 2:730664/140‑1 (MQ=255) gAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATtg > 2:590769/1‑140 (MQ=255) gAATAAAGC‑AG‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAAATGCCTTCAGGTAGAGAGCTGTAATGTGTTGCTGCGGTGGTAccctgt > 2:265986/1‑136 (MQ=255) aaaGC‑AG‑GGGG‑GGCTGCCCCTGATGATACCTCAGAGACATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATtggtgg < 1:409330/140‑1 (MQ=255) | CTCAGCGTGCTGCTGTCACTGTTCATAAACGATGATATATCGCCGACATCCAGCGCCTGGGCCGGAGATATTCCGGAAAACAGCAGAGCGAGAGGCAGAAGGTGCTTTTTCATAACAATTCCGTCCAGGAATAAAGC‑A‑‑GGGG‑GGCTACCCCTGCTGGTACATCAGAGAGATTAACTGGTCCAGGTCGCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGG > NC_000913/309914‑310184 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |