| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,348,279 | (C)6→7 | intergenic (+41/‑173) | npr → / → yrbL | phosphorelay protein Npr/protein kinase‑like domain‑containing protein YrbL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,348,273 | 1 | . | C | 89.8% | 185.5 / 12.9 | 59 | intergenic (+35/‑179) | npr/yrbL | phosphorelay protein Npr/protein kinase‑like domain‑containing protein YrbL |
| Reads supporting (aligned to +/- strand): ref base . (2/4); new base C (34/19); total (36/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CT‑CCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGTTTAAGTTAATCGA > NC_000913/3348137‑3348411 | gCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CT‑ccc > 2:74795/1‑140 (MQ=255) aaGGACGGCAGATTGAGTTTGACGCGACCGGTCAACAGGAAGAGGAAGAACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CT‑ccc‑cccc < 2:390882/140‑2 (MQ=255) aaGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CT‑ccc‑cccc > 2:692042/1‑139 (MQ=255) gACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACGGGCCGCCGTTCTCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTACATCACTTTGACATACAACTCCCTTCAAA‑CT‑ccc‑ccccgac < 2:597371/140‑5 (MQ=255) cGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACaa > 1:169570/1‑140 (MQ=255) gCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CT‑CCC‑CCCGACAATaa > 1:819152/1‑140 (MQ=255) cAGATTGAAGTTGAAGCGCCCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATaa < 2:39711/140‑1 (MQ=255) gaagCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACCC‑CCC‑CCCGACAATAAGAAAATCACGTa > 1:555602/1‑140 (MQ=255) aagCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTAc > 2:704343/1‑140 (MQ=255) aCCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGaaa > 2:850074/1‑140 (MQ=255) aCCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CT‑CCC‑CCCGACAATAAGAAAATCACGTACTGAAAt < 2:819152/140‑1 (MQ=255) gaggaagCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAAc > 2:791017/1‑140 (MQ=255) gaggaagCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAAc > 2:661158/1‑140 (MQ=255) cACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCAttt > 1:657781/1‑140 (MQ=255) ggCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTAc > 2:771906/1‑140 (MQ=255) cgccgTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACAtt > 1:328793/1‑140 (MQ=255) ccgTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAACCC‑CCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACAtttt < 2:555602/140‑1 (MQ=255) ctctTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCTTTCTCAAACAACGTCAGTTGTACATTTTGTGCGCTTTTc > 2:257552/1‑140 (MQ=255) ctTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCAc > 2:144962/1‑140 (MQ=255) ctTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCAc > 1:131336/1‑140 (MQ=255) tttAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACt < 1:771906/140‑1 (MQ=255) tttAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTAAATCAACGTCAGTTATACATTGTGTGCGCTTTTCACt > 1:362715/1‑140 (MQ=255) tAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACttt < 2:657781/140‑1 (MQ=255) tAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACttt < 1:850074/140‑1 (MQ=255) ttCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCT‑AATCAACGTCATTTGTACATTTTGTGCACTTTTCACTTTCaga > 1:838291/1‑140 (MQ=255) cTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCagaa < 1:74795/140‑1 (MQ=255) tGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCagaag < 2:131336/140‑1 (MQ=255) gTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAgaagaa > 1:701139/1‑140 (MQ=255) gTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAgaagaa > 1:570145/1‑140 (MQ=255) gTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAgaagaa > 2:738961/1‑140 (MQ=255) gTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAgaagaa > 1:753436/1‑140 (MQ=255) gTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAgaagaa > 2:68553/1‑140 (MQ=255) gTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACACCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAgaagaa > 1:168621/1‑140 (MQ=255) ttttGATGAAGATTATTCTTCACCATTTTAACATACAGCTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAAc < 1:417786/140‑1 (MQ=255) aaGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGaa < 2:717489/140‑1 (MQ=255) tAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTCTGCGCTTGTCACTTGCAGAAGGACCTTAAGAAAACCt > 1:374240/1‑140 (MQ=255) aaTCTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCTCTTTTCACTTTCAGAAGAACCTTAAGAAAACCtt < 2:328793/140‑1 (MQ=255) tCTTCATCACTTTGACATACAAATCTCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTaa < 1:257552/140‑1 (MQ=255) cTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAag < 2:169570/140‑1 (MQ=255) cTTCATCACTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAag < 1:791017/140‑1 (MQ=255) catcaCTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCT‑AATCAACGTCATTTGTACATTTTGTGCACTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGc < 2:838291/140‑1 (MQ=255) atcaCTTTGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGc > 1:786783/1‑140 (MQ=255) caCTTTGACATACAACTCCCTTAAAA‑CT‑CCCACCCGACAATAAGAAAAGCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGCAt < 2:362715/140‑1 (MQ=255) tttGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCtt < 1:600190/128‑1 (MQ=255) tttGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCtt > 2:600190/1‑128 (MQ=255) tttGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGCATTGt > 1:619497/1‑140 (MQ=255) tttGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACATACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGCATTGt > 1:144957/1‑140 (MQ=255) ttGACATACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGCATTGtt < 1:738961/140‑1 (MQ=255) tACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGTATTGTTTAGGtt < 1:661158/140‑1 (MQ=255) tACAACTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGCATTGTTTAGGtt < 2:701139/140‑1 (MQ=255) aaCTCCCTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATATGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAGGAAAACCTTAAGAGGCATTGTTTAGGTTTTg > 2:85485/1‑140 (MQ=255) cccTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGTTTa > 1:792043/1‑140 (MQ=255) cccTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTCAAGAAAAACTTAAGCGGCATTATTTAGGTTTTGTTTa > 1:317809/1‑140 (MQ=255) ccTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTTAGAAAACATTACGAGGCATTGCTTAGGTTTTGTTTaa > 1:370243/1‑140 (MQ=255) ccTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGCATTGTTTAGGtt > 2:691957/1‑132 (MQ=255) ccTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGCATTGTTTAGGtt < 1:691957/132‑1 (MQ=255) ccTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGCATTGTTTAGGt > 1:841343/1‑131 (MQ=255) ccTTCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGCATTGTTTAGGt < 2:841343/131‑1 (MQ=255) ttCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTTAGAAATCATTAAGAGGTATTGACTAGGTTTTGCTTAAGt > 2:402670/1‑140 (MQ=255) ttCAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGTTTAAGt > 1:524877/1‑140 (MQ=255) cAAA‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTCGTTTAAGTTa > 1:517855/1‑140 (MQ=255) aaa‑CTCCCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGTAAACCTTCAGAGGCATAGTTTTGGTTTTGTTTAAGTTaa > 2:282002/1‑140 (MQ=255) cT‑CCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGTTTAAGTTAATCGa < 1:614183/140‑1 (MQ=255) | GCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAATCTTCATCACTTTGACATACAACTCCCTTCAAA‑CT‑CCC‑CCCGACAATAAGAAAATCACGTACTGAAATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGTTTAAGTTAATCGA > NC_000913/3348137‑3348411 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |