| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,770,236 | (C)6→8 | intergenic (+556/+7) | yibV → / ← yibH | PF15596 family protein YibV/inner membrane protein YibH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,770,230 | 1 | . | C | 87.9% | 94.9 / 7.1 | 33 | intergenic (+550/+13) | yibV/yibH | PF15596 family protein YibV/inner membrane protein YibH |
| Reads supporting (aligned to +/- strand): ref base . (2/2); new base C (15/14); total (17/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 3,770,230 | 2 | . | C | 81.8% | 87.4 / 14.7 | 33 | intergenic (+550/+13) | yibV/yibH | PF15596 family protein YibV/inner membrane protein YibH |
| Reads supporting (aligned to +/- strand): ref base . (3/3); new base C (14/13); total (17/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CT‑‑‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATCACCGAAACATGGCTGAAATGGTCGGAGTAAACCGCCACCTGGGCGTAGATGCCGTCGGG > NC_000913/3770094‑3770362 || aGACGGATAAAAAATCCAATAAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑ct‑‑‑ccc < 1:668507/140‑1 (MQ=255) gATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑ct‑‑‑ccc‑‑c‑‑cccc < 2:84465/140‑3 (MQ=255) aTAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑ct‑‑‑ccc‑‑c‑‑ccc < 1:804188/138‑2 (MQ=255) aTAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑ct‑‑‑ccc‑‑c‑‑ccc > 2:804188/1‑137 (MQ=255) aaaaaaTCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑ct‑‑‑ccc‑‑c‑‑cccctc < 1:672589/139‑5 (MQ=255) aaaaaaTCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑ct‑‑‑ccc‑‑c‑‑cccctc > 2:672589/1‑135 (MQ=255) aaaaaTCCAATGAGAGCTCACTCATCCAGAAGTTATTAATATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑ct‑‑‑ccc‑‑c‑‑cccctccc < 2:249327/140‑7 (MQ=255) gagaGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATc < 2:701913/140‑1 (MQ=255) acacTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGACCCAAATa < 2:500860/140‑1 (MQ=255) cTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAg < 1:549386/140‑1 (MQ=255) cATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CT‑‑‑CCC‑‑C‑‑CC‑‑CCTCCCCTCCATGATCCAAATAAAGaaa > 2:571117/1‑138 (MQ=255) tCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATaa > 1:532265/1‑140 (MQ=255) tCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATaa > 1:727177/1‑140 (MQ=255) gAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTGCATAAT‑CTA‑‑CCCA‑C‑‑CC‑‑GC‑CCCCTCATTGATGCAAATAAAGATAATGCa > 2:225017/1‑140 (MQ=255) aCTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATc < 1:502465/140‑1 (MQ=255) attaACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGc < 1:501445/140‑1 (MQ=255) tAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTAAATGATCAAAACAAAGATAATTCATCCAGCTGGTCAt > 1:385183/1‑140 (MQ=255) aaaGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAgcagca < 1:659140/140‑1 (MQ=255) aaGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCGATGATCCAAATAGAGAGAATGCATCCAGCTAGTCATTCTTAGCAGCAc > 2:223795/1‑140 (MQ=255) aaGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCAc > 1:170751/1‑140 (MQ=255) tcatcGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCa < 1:465296/140‑1 (MQ=255) aTGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATCACCGa < 1:195983/135‑1 (MQ=255) aTGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATAACCGa > 2:195983/1‑135 (MQ=255) aTGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAAAGCATCCAGTTGGTCATCCTTAGCAGCACTTCCCGCATCACCGAAACAt > 2:311323/1‑140 (MQ=255) gTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATCACCGAAACATGGCTg > 2:617006/1‑140 (MQ=255) gTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATCACCGAAACATGGCTg > 1:44000/1‑140 (MQ=255) tatGCATAAATAATTAGTCATTACAACGCGCAAAGTTCTATAATCCTC‑‑CCC‑‑C‑‑CC‑‑AC‑CCCCCCAGTGATCCAAATAAAGATAATGCATCCACCTGGATATTCTTAGCAGCACTTTCCGCATCACCGAAACATGGCTGAAAt > 2:859622/1‑140 (MQ=255) tGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCTCAGCACCGAGACATGGCTGAAATgg > 1:228868/1‑140 (MQ=38) tGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTGCCGCATCACCGAAACATGGCTGAAATgg < 1:859622/140‑1 (MQ=255) ttACAAGGAGCAAAGTTCCATAAT‑CTCCCCCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATCACCGAAACATGGCTGAAATGGTCGGAGTAAACCGCCAc > 1:613009/1‑140 (MQ=255) ttACAAGGAGCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATCACCGAAACATGGCTGAAATGGTCGGAGTAAACCGCCAcc < 2:532265/140‑1 (MQ=255) tACAAGGAGCAAAGTTCCATAAT‑CTC‑‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATCACCGAAACATGGCTGAAATGGTCGGAGTAAACCg > 1:807961/1‑133 (MQ=255) tACAAGGAGCAAAGTTCCATAAT‑CTC‑‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATCACCGAAACATGGCTGAAATGGTCGGAGTAAACCg < 2:807961/133‑1 (MQ=255) gCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATCACCGAAACATGGCTGAAATGGTCGGAGTAAACCGCCAcc < 2:443834/131‑1 (MQ=255) gCAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATCACCGAAACATGGCTGAAATGGTCGGAGTAAACCGCCAcc > 1:443834/1‑131 (MQ=255) gCAAAGTTCCATAAT‑CT‑‑‑CCC‑‑CCGCC‑‑TC‑CCCCGCAATGATGCAAATAAACATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATCACCGAAACATGGCTGAAATGGTCGGAGTAAACCGCCACCTGGGCGTAg < 2:228868/140‑1 (MQ=25) cAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATCGCCGAAACAAGGCGGAAGTGGTCGGAGTAAACCGCCACCTGGGCGTAGa > 2:347198/1‑140 (MQ=25) cAAAGTTCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATCACCGAAACAAGGCGGAAATGGTCGGAGTAAAACGCCACCTGGGCGTAGa > 2:302044/1‑140 (MQ=255) ttCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATCACCGAAACATGGCTGAAATGGTCGGAGTAAACCGCCACCTGGGCGTAGATGCCg < 2:44000/140‑1 (MQ=255) ttCCATAAT‑CTCC‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATCACCGAAACATGGCTGAAATGGTCGGAGTAAACCGCCACCTGGGCGTAGATGCCg < 1:684915/140‑1 (MQ=255) ttCCATAAT‑CT‑‑‑CCCCGC‑‑CC‑‑TC‑CTCCGCAATGATCCAACTAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATCACCGAAACATGGCTGAAATGGTCGGAGTAAACCGCCACCTGGGCGTAGATGCCg < 1:302044/140‑1 (MQ=25) tAAT‑CT‑‑‑CCC‑‑C‑‑CCCTTC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATCACCGAAACATGGCTGAAATGGTCGGAGTAAACCGCCACCTGGGCGTAGATGCCGTCggg > 1:448955/1‑140 (MQ=255) || AGACGGATAAAAAATCCAATGAGAGCACACTCATCCAGAACTTATTAACATAATGAATATTAAAGAAAAATCATCGAAGCTAATGAAGTAATATGCAAAAATAATTAGTCCTTACAAGGAGCAAAGTTCCATAAT‑CT‑‑‑CCC‑‑C‑‑CC‑‑TC‑CCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCACTTTCCGCATCACCGAAACATGGCTGAAATGGTCGGAGTAAACCGCCACCTGGGCGTAGATGCCGTCGGG > NC_000913/3770094‑3770362 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |