| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,500,982 | (C)5→6 | intergenic (‑191/‑278) | yjgX ← / → yjgZ | KpLE2 phage‑like element; putative phosphoethanolamine transferase YjgX, N‑terminal fragment/KpLE2 phage‑like element; uncharacterized protein YjgZ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,500,977 | 1 | . | C | 94.9% | 200.6 / 2.6 | 59 | intergenic (‑186/‑283) | yjgX/yjgZ | KpLE2 phage‑like element; putative phosphoethanolamine transferase YjgX, N‑terminal fragment/KpLE2 phage‑like element; uncharacterized protein YjgZ |
| Reads supporting (aligned to +/- strand): ref base . (0/3); new base C (29/27); total (29/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CA‑‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACAACCCCGGTGGGTATGACCGATGCCTTTCTCACTCT > NC_000913/4500852‑4501110 | cTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAgg > 2:829517/1‑140 (MQ=255)cTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAgg > 2:49201/1‑140 (MQ=255) ccGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGt < 2:469773/140‑1 (MQ=255) tGCATGTTACACTGGAACTGCAAGACGGGCCCTTCGCACCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGgacaga < 1:311837/140‑1 (MQ=255) cATGTTACACTGGTACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATTCCC‑‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGgacagaca < 2:676142/140‑1 (MQ=255) cATGTTACACTGGTACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGgacagaca < 2:795305/140‑1 (MQ=255) acagTTACTCTGGTACCCCAAGGGGGGGCCTTCTCCCCTTTGACATTAATCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGgacagaca < 2:406072/137‑1 (MQ=255) acacTGGTACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CACCC‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGtt > 1:174878/1‑140 (MQ=255) gTACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTGACCCGGACATACACCGTTATGGACt > 1:365965/1‑140 (MQ=255) gTACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACt > 2:726331/1‑140 (MQ=255) aCTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTtc < 1:49201/140‑1 (MQ=255) aCTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CACGCGAGGCCTTGGTGCGCGTCACCCAGACAAACACCGTTATGGACTtc > 2:290339/1‑140 (MQ=255) cTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTtct > 1:789633/1‑140 (MQ=255) cTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGACACGCGTACAGACTCCGTTATGGAcctgt > 1:406072/1‑136 (MQ=255) gCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTctct < 2:810816/140‑1 (MQ=255) agagGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTctct < 1:488884/137‑1 (MQ=255) agagGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTctct > 2:488884/1‑137 (MQ=255) agGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCttgttg > 1:170788/1‑140 (MQ=255) gggggCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGc > 2:584723/1‑140 (MQ=255) gggggCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGGCACCCGGCCAGACACCGTTATGGACTTCTCTTGTTGc > 1:396171/1‑140 (MQ=255) ggggCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCa < 2:216149/140‑1 (MQ=255) ggggCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTAACCCGGAAAGAGACAGTTATGAACTTCTCTTGTTGCa > 1:269755/1‑140 (MQ=255) gCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcga < 1:829517/140‑1 (MQ=255) gCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcga < 2:656210/140‑1 (MQ=255) gCCTTCGCTCCTCTGACATTACTCACTATATTCACTAATACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcga < 1:299259/140‑1 (MQ=255) ccTTCGCTTCCCTGACAATACTGAGTATTTAGACTACTTTTCCCCATCGGCGATCCATAACAACCGATT‑CG‑‑CTCCC‑CTCGCCAGCATTTGTCGCCCGGCACCCGGACAGACACCGTTATGGACCTCTCTTGTTGCAcgat < 2:411991/140‑1 (MQ=255) ccTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcgat < 1:827476/140‑1 (MQ=255) ccTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcgat < 2:170788/140‑1 (MQ=255) ccTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcgat < 2:709001/140‑1 (MQ=255) ccTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcgat > 2:546947/1‑140 (MQ=255) ttCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcgatcg < 2:789633/140‑1 (MQ=255) ttCGCTCCTCTGACATGTCTCAATATTTTCACTCCAACACCCCATCTGGCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcgatcg < 2:396171/140‑1 (MQ=255) ttCGCTCCTCTGACACTACTCATTATTTTTACTACTAGACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcgatcg < 1:290339/140‑1 (MQ=255) cGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcgatcgat > 1:676526/1‑140 (MQ=255) gCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CACCC‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCAcgatcgat < 2:174878/140‑1 (MQ=255) ctcctcTGACATTACTCTGTATGTTCACTACTACAGCCCATCTGCCATGCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCa < 2:365965/140‑1 (MQ=255) cctcTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACATACATCGTGATGGACTTATCTTTTTGCACGATCGATCAAt > 2:299259/1‑140 (MQ=255) aCATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCATTAAGGAATTCTCTTGCTGCACGATCGATCAATTGTTat > 2:307552/1‑140 (MQ=255) aTTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTatgc < 1:465580/140‑1 (MQ=255) aTTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTatgc < 2:837808/140‑1 (MQ=255) tACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTatgcat < 2:840363/140‑1 (MQ=255) tCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCt > 1:814000/1‑140 (MQ=255) aGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGa < 1:726331/140‑1 (MQ=255) tttCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGAcacca < 1:546947/140‑1 (MQ=255) tacACCCCATCTGCCATCCATAACAACCGATT‑CA‑‑CTCCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACAACCCCgg < 2:260217/140‑1 (MQ=255) cccATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACAACCCCGGTGGGt > 1:728353/1‑140 (MQ=255) cccATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACAACCCCGGTGGGt > 1:79704/1‑140 (MQ=255) cATCTGCCATCCATAACTACCGTTT‑CA‑‑C‑CCCTCTCCCGATGCGTTGTTACCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACAACCCCGGTGGGTAt < 2:252055/140‑1 (MQ=255) cATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATACATGCTGACACCACAACCCCGGTGGGTAt > 1:252055/1‑140 (MQ=255) cATCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGCTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACAACCCCGGTGGGTAt > 1:601407/1‑140 (MQ=255) tCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCACTTGTTCTACATGCTGATACCAGAACCCCGGTGGGTATGa > 2:379115/1‑140 (MQ=255) tCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACAACCCCGGTGGGTATGa > 1:13113/1‑140 (MQ=255) tCTGCCATCCATAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACAACCCCGGTGGGTATGa > 1:853322/1‑140 (MQ=255) catccatAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACAACCCCGGTGGGTATGACCGAt < 2:674996/140‑1 (MQ=255) catccatAACAACCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACAACCCCGGTGGGTATGACCGAt < 2:728353/140‑1 (MQ=255) caacCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACAACCCCGGTGGGTATGACCGATGCCTTtc > 2:426078/1‑138 (MQ=255) caacCGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACAACCCCGGTGGGTATGACCGATGCCTTtc < 1:426078/138‑1 (MQ=255) ccGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACAACCCCGGTGGGTATGACCGATGCCTTTCTCAct < 2:79704/140‑1 (MQ=255) ccGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACAACCCCGGTGGGTATGACCGATGCCTTTCTCAct > 1:782943/1‑140 (MQ=255) cGATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACAACCCCGGTGGGTATGACCGATGCCTTTCTCActc > 2:33230/1‑140 (MQ=255) gATT‑CAC‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCGCAACCCCGGTGCGTCTGACCGCTGCCTTTCTCActct > 1:325139/1‑140 (MQ=255) | CTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAGGGGGCCTTCGCTCCTCTGACATTACTCAGTATTTTCACTACTACACCCCATCTGCCATCCATAACAACCGATT‑CA‑‑C‑CCC‑CTCGCGAGGCGTTGTTGCCCGTCACCCGGACAGACACCGTTATGGACTTCTCTTGTTGCACGATCGATCAATTGTTATGCATGCTGACACCACAACCCCGGTGGGTATGACCGATGCCTTTCTCACTCT > NC_000913/4500852‑4501110 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |