| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3592431 | 44 (0.860) | 3 (0.060) | 3/274 | 5.0 | 6.5% | intergenic (‑106/+293) | ugpB/livF | sn‑glycerol 3‑phosphate ABC transporter periplasmic binding protein/branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| ? | NC_000913 | 3592436 = | 43 (0.850) | intergenic (‑111/+288) | ugpB/livF | sn‑glycerol 3‑phosphate ABC transporter periplasmic binding protein/branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGTGCTGAAGCTGTATAATGTAACGGTTTCATCGTTTATCTCTCTTGTTGTACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCG > NC_000913/3592294‑3592567 | aGTGCTGAAGCTGTATAATGTAACGGTTTCATCGTTTATCTCTCTTGTTGTACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTa < 2:190399/140‑1 (MQ=255)aGTGCTGAAGCTGTATAATGTAACGGTTTCATCGTTTATCTCTCTTGTTGTACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTa < 2:20054/140‑1 (MQ=255)aGTGCTGAAGCTGTATAATGTAACGGTTTCATCGTTTATCTCTCTTGTTGTACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTa < 2:217252/140‑1 (MQ=255) aGCTGTATAATGTAACGGTTTCATCGTTTATCTCTCTTGTTGTACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTa < 2:511725/140‑1 (MQ=255) aGCTGTATAATGTAACGGTTTCATCGTTTATCTCTCTTGTTGTACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTa < 1:58711/140‑1 (MQ=255) aTGTAACGGTTTCATCGTTTATCTCTCTTGTTGTACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAg > 1:749092/1‑140 (MQ=255) gTAACGGTTTCATCGTTTATCTCTCTTGTTGTACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATGACTGTTTTGTTACATTGGTAAGATAGTAAGGTGTCAGaa > 2:362029/1‑140 (MQ=255) aaCGGTTTCATCGTTTATCTCTCTTGTTGTACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAg > 2:196669/1‑140 (MQ=255) cGGTTTCATCGTTTATCTCTCTTGTTGTACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGAt > 2:46891/1‑140 (MQ=255) cGGTTTCATCGTTTATCTCTCTTGTTGTACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGAt > 1:448766/1‑140 (MQ=255) cGGTTTCATCGTTTATCTCTCTTGTTGTACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGAt > 2:738814/1‑140 (MQ=255) tttCATCGTTTATCTCTCTTGTTGTACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGAc < 1:46891/140‑1 (MQ=255) tCATCGTTTATCTCTCTTGTTGTACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTAAATTGGTAAGATATTAAGCTGTCAGAAAGATGACaa > 2:334151/1‑140 (MQ=255) tCATCGTTTATCTCTCTTGTTGTACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTATTAAATTGGTAAGATACTAAGATGTCAGAAAGATGACaa > 2:313030/1‑140 (MQ=255) ctctTGTTGTTCCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCg < 1:137236/140‑1 (MQ=255) ctctTGTTGTACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCg < 1:749095/140‑1 (MQ=255) tgtACCGAATGCGCGTATTCACGCGGTTTTTGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGa < 1:313030/140‑1 (MQ=255) gtACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAg > 1:178164/1‑140 (MQ=255) gtACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAAC‑‑‑‑‑‑‑‑‑‑‑‑TTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGgag > 1:107147/1‑140 (MQ=255) ccGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTTAGAAAGAGGACGAGTCGGTGAGGGCGTGGGTGAGGGa > 1:253906/1‑140 (MQ=255) gAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGaaa > 1:699444/1‑140 (MQ=255) aaTGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGaaaa > 2:436254/1‑140 (MQ=255) aaTGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGCAAGGTGTCAGAAAGATGGCAAGGCGGTGACAGCGTGGGTTAGGGaaaa > 2:416394/1‑140 (MQ=255) aaTGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTT‑‑‑‑GATTGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATggg > 1:82616/1‑140 (MQ=255) tGCGCGAATTCACGCGTTTTATGCTCGC‑GGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATgg > 1:23019/1‑140 (MQ=255) gAATTCACGCGTTTTATTCTCGTGGGGTAACATGAAATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGgaga < 2:253906/140‑1 (MQ=255) gcgTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCAc > 2:636816/1‑140 (MQ=255) ttATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACGAGGCGGTGACGGCGCGACTGAGGGAGAATGCAAGATGGGGCACGGATa > 2:403927/1‑140 (MQ=255) ttATGCTCGCGGGGTAACATGACATGCTCGAATTACAAAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATa < 1:295625/140‑1 (MQ=255) cgcgGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGa < 2:448766/140‑1 (MQ=255) cgGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGaa > 2:707058/1‑139 (MQ=255) cgGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGaa < 1:707058/139‑1 (MQ=255) ggggTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGaaaa < 1:13336/140‑1 (MQ=255) aaCATGACATGCTCGAATTACATAACAATCACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAg < 1:416394/140‑1 (MQ=255) gacatgCTCGAATTACAGAAAACTAGCTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGGAAATATAGAAGGt < 1:403927/140‑1 (MQ=255) catgCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGa > 2:706393/1‑125 (MQ=255) catgCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGa < 1:706393/125‑1 (MQ=255) catgCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGGGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCt > 2:848418/1‑140 (MQ=255) atgCTCGAATTACAGAAAAATAACTTTTTTGTTACATTT‑‑‑‑GATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATc < 2:82616/140‑1 (MQ=255) gCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGaa < 1:738814/140‑1 (MQ=255) tCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATc < 2:23019/140‑1 (MQ=255) cGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCa > 1:818470/1‑140 (MQ=255) aaTTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCaaa < 2:178164/140‑1 (MQ=255) aTTACAGAAAAATAACTTTTTTGTTACATTTGCAAGATAGTAAGATGTCAGAAAGATGACAAGGCGGTGACGGAGTGGGTGGGGGAAAATGGGAGATGGGTCACGGATAAGCGGGAACAAATAGAAGGTCTGAATCAAAc > 2:375108/1‑140 (MQ=255) cTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCa > 2:111764/1‑140 (MQ=255) cTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCa < 1:436254/140‑1 (MQ=255) tttGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCg > 1:664902/1‑140 (MQ=255) | AGTGCTGAAGCTGTATAATGTAACGGTTTCATCGTTTATCTCTCTTGTTGTACCGAATGCGCGAATTCACGCGTTTTATGCTCGCGGGGTAACATGACATGCTCGAATTACAGAAAAATAACTTTTTTGTTACATTTGTAAGATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCG > NC_000913/3592294‑3592567 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |