| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,206,435 | 0 | C | T | 50.0% | 2.2 / 12.4 | 18 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| Reads supporting (aligned to +/- strand): ref base C (1/8); new base T (9/0); total (10/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.11e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAA > NC_000913/3206300‑3206574 | aaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAACATAAAACCGCATCTTTCGTGGTAGTATGTGGCGGGGGAATTTTTcaaa > 2:315467/1‑137 (MQ=255) tGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGAAATTTTTTAGACaaaa > 2:581864/1‑139 (MQ=255) cagattcattcTTATTTTCGCGCTGATTCACGAACTGTTCATTACATAATCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCatg < 2:270917/137‑1 (MQ=255) ttcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGa < 1:581864/140‑1 (MQ=255) tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGAATTTTTTTACACAAATACAAAAACTAGAGTTGCGATGATGAGCGgaaaa > 1:721540/1‑138 (MQ=255) tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGAACTTTTTCAGACAAAAACAAAAACAAGAGATGTCATAATGAGAGGAAga > 1:446265/1‑139 (MQ=255) ttttCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGAATTTTTTCAGACAAAAACAAACAATAGATGTGCCACGATGAGGGAAAgatg > 1:270917/1‑137 (MQ=255) gcgTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGAATTTTTTCAGACAAAAACAAAAAATGGAGTTGCCCTGATGGGGGGAAGgaataaaa > 1:557120/1‑138 (MQ=255) gcgTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGAATTTTTTCAGACAAAAAAAAAAAATGGAGTTGCCATGATGAGCGAAAGtaaaaaaa > 2:708759/1‑138 (MQ=255) aTTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAgg < 2:745278/140‑1 (MQ=255) tCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAATAATAAGCAACAGGCa < 1:198691/140‑1 (MQ=255) gTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAg < 1:170186/140‑1 (MQ=255) atatTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGAATTTTTTCAGACAAAAAAAAAAAATGGAGGTTCCATGATGAGCGAAAGAAATAAACAACAAGCAGAGAATAAGTTGGAagag > 2:106919/1‑140 (MQ=255) atatTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGAAATTTTTCAGAAAAAAAAAAAAAATAGAGGTTGCATGATGAGAGGAAGAAAAAAAAAACAAGCAGAGAAAAAATTTATagag > 2:170186/1‑140 (MQ=255) atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGT‑GGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAACAATAGGCAGTGATTAAGTTGACAGAGAt > 1:357974/1‑140 (MQ=255) atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGAt < 1:533654/140‑1 (MQ=255) tGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGAATTTTTTCAGACAAAAACAAAAAATAGAGTTGTCATGATGAGGGAAAATAAAAAACAAAAAGCAGAGAAAAAAATGAAAAAGAATGTCGCTa > 2:490882/1‑140 (MQ=255) taAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCAGAAAAAAACAAAAACTGGAGTTGCCATGATGAGCAAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCa < 1:106919/140‑1 (MQ=255) caTTTTTAGTGGTAGTTTGTGGC‑GGTGAATTTTTTTAGACAAAAAAAAAAAAAGGAGTTTGCATGATGAGCGAAAAAAAAAAACAAAAAGAAGAGAATAAAATGAAATAGATTGTTGCTAAATTTACCGCCAAAAttttt > 2:105104/1‑138 (MQ=255) aGTGGTAGTTTGTGGC‑GGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCAATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGaa < 1:105104/140‑1 (MQ=255) tttGTGGC‑GGTGAATTTTTTCCGACAAAAAAAAAAAATGGGGGTGGCCTGATGAGGGGAAGGAAAAAACAAAAGGCAGGGAATAAGATTACAGAGATTTTCGCTAAATTTTACCCCCTGATTTTTTCCCCAATGcccgga > 2:825466/1‑136 (MQ=255) gAATTTTTCCAGACAAAAAAAAAAACGGGTGTTGCCATGAGGGGCGAAACTAATAAGCAACAGGCAGTAAATAAGTTAACAGAGATTTCCGCTAAGTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa < 2:721540/140‑1 (MQ=255) ccAGACAAATACAAAAACTGGGATTGCCATGCTGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaa < 2:361008/140‑1 (MQ=255) ccAGAAAAATAAAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaa < 1:490882/140‑1 (MQ=255) | AACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAA > NC_000913/3206300‑3206574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |