| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,955,459 | T→C | T517A (ACC→GCC) | torZ ← | trimethylamine N‑oxide reductase 2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,955,459 | 0 | T | C | 98.4% | 218.0 / NA | 63 | T517A (ACC→GCC) | torZ | trimethylamine N‑oxide reductase 2 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (27/35); minor base A (1/0); total (28/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCGGTATAGATCTCTTTTCCGCCAGGTTTGAGTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGCCATGCTTTAATCAGACGATTAGTA > NC_000913/1955323‑1955595 | tCGGTATAGATCTCTTTTCCGCCAGGTTTGAGTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCAt < 2:157264/140‑1 (MQ=255) tctcTTTTCCGCCAGGTTTGAGTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCa < 1:189541/140‑1 (MQ=255) tctcTTTTCCGCCAGGTTTGAGAAATTCCGCCAGACCGGCAAACACGTGAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCa < 2:343138/140‑1 (MQ=255) ttttCCGCCAGGTTTGAGTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGTTGGTTGCTGTATTCGCCGGCCATCGTCAAGTCATTgc > 1:275721/1‑140 (MQ=255) ttttCCGCCAGGTTTGAGTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTgc > 1:180200/1‑140 (MQ=255) ttttCCGCCAGGTTTGAGTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTgc > 1:828735/1‑140 (MQ=255) ttttCCGCCAGGTTTGAGTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGATGTAATCACCGGACATCGTCGAGTCATTgc > 1:540072/1‑140 (MQ=255) tttCCGCCAGGTTTGCGTAATTCCGTAAGCTCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTgcg < 1:315504/140‑1 (MQ=255) ccGCCAGGTTTGAGTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTc < 1:835694/140‑1 (MQ=255) cGCCAGGTTTGAGTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCa > 2:565471/1‑140 (MQ=255) cGCCAGGTTTGAGTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCa < 1:659100/140‑1 (MQ=255) ccAGGTTTGAGTAATTCAGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTCGCTATAATCACCGGCCATCGTCAAGTCATTGCGCTCaaa > 2:340810/1‑140 (MQ=255) ccAGGTTTGAGTAATGCCGCAAGATAGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCaaa < 1:363971/140‑1 (MQ=255) ggTTTGAGTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGa > 2:584047/1‑140 (MQ=255) gTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATgtggtg < 1:809182/140‑1 (MQ=255) tAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGa < 1:449927/140‑1 (MQ=255) aTTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACg < 2:640134/129‑1 (MQ=255) aTTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACg > 1:640134/1‑129 (MQ=255) ttCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCg > 2:734042/1‑140 (MQ=255) ccGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGt < 1:739888/140‑1 (MQ=255) aGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGAt < 2:38769/131‑1 (MQ=255) aGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGAt > 1:38769/1‑131 (MQ=255) gATCGGCAAACATGTCAAAATCGTTACGCGCTCCAATTTGCGGAGCAACAGCCTGCTTCATTGCCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCTAGTCACTGCGCTCAAACGATGTGGTGATCGGTAATACg < 2:540072/140‑1 (MQ=255) gATCGGCAAACACGTCACAATCTTTACGCGCTTCAAATTCCGGAGCAATAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACg < 2:275721/140‑1 (MQ=255) gCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATc > 1:774120/1‑140 (MQ=255) cAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCt < 1:29025/140‑1 (MQ=255) gTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGCTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGtt > 2:810116/1‑140 (MQ=255) aaaTCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGgc < 2:36453/140‑1 (MQ=255) aaaTCGTTACGCACTTCGAATTCCGGAGCAACAGCATGCATCATCGGCTCAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGgc < 2:253421/140‑1 (MQ=255) gTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGctgctg < 2:851305/140‑1 (MQ=255) gTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGctgctg < 1:584047/140‑1 (MQ=255) aCGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGctgctg > 2:51399/1‑137 (MQ=255) aCGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGctgctg < 1:51399/137‑1 (MQ=255) cTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAg < 1:565471/140‑1 (MQ=255) ttCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATTTGGTGATCCGTAATACAATATCTGCATGTTCGGCTGCTGCGGTCCAGt > 2:295375/1‑140 (MQ=255) ggAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGa > 2:84590/1‑140 (MQ=255) ggAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGATAATACGAAATCGGCGGGTTTGGCTGCTGCGGTCCAGTAGCATTCAGa > 2:269333/1‑140 (MQ=255) cAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCTTGTATGGTTGCTGCGGCCCAGTAGCATTCAGAAacgacg > 2:297139/1‑140 (MQ=255) tGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGatcat < 2:180200/140‑1 (MQ=255) gCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGatcatc > 1:722445/1‑140 (MQ=255) cTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCAtct > 1:509458/1‑140 (MQ=255) cTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTACGTGTTTGGCTGGTGCGGTCCAGTAGCATTCAGAAACGACGATCAtct > 2:274904/1‑140 (MQ=255) ggCACAATATGCTGGCTGCTGTAATCACCGGCCATCGGCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGAATTCAGAAACGACGATCATCTCCGGttt < 1:340810/140‑1 (MQ=255) gatatGCTGGTTGCTGTAATCATCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGcc < 1:418690/139‑1 (MQ=255) aaTATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGTTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGcc < 1:4785/140‑1 (MQ=255) aaTATGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGcc < 2:774120/140‑1 (MQ=255) tatGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGcc > 1:519798/1‑138 (MQ=255) tatGCTGGTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGcc < 2:519798/138‑1 (MQ=255) ggTTGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCACTCAGAAACGACGATCAACTCCCGTTTCTGCCATGCTTTa > 2:333394/1‑140 (MQ=255) ttGCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGCCCTACTTTAAt > 1:108116/1‑140 (MQ=255) gCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGCCATGCTTTAATCa > 1:108034/1‑140 (MQ=255) gCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGCCATGCTTTAATCa > 1:565155/1‑140 (MQ=255) gCTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGAAGCATTCACAAAGGACACTCATCTCAGGTTTGTGCCATGGTTTAATcc > 2:418690/1‑139 (MQ=255) cTGTAATCACCGGCCGTCGTCAGGTTATTTCGCTCAAGCGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGCCATGCTTTAATCAg < 1:297139/140‑1 (MQ=255) cTGTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGCCATGCTTTAATCAg < 2:108034/140‑1 (MQ=255) gTAATCTCCCGCCATCGTCAAGTCATTGCGCCCAAACGATGTGTTTATCGGTAACACGGTATTTGCCTGTTTGGCTGCTGCGGTCCAGTCGCATTCAAAAACGTCGCTCAACTCCGGTTTCTGCCATGCTTTAATCAGAc < 2:108116/140‑1 (MQ=255) gTAATCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGCCATGCTTTAATCAGAc < 1:810116/140‑1 (MQ=255) acagtCACCGGCCATAGTCAAGTCATTGCTCTCAAACAATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGCCATGCTTTAATCAGAc < 1:420249/136‑1 (MQ=255) aTCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGTTTTCTGCCATGCTTTAATCAGACGAt < 2:722445/140‑1 (MQ=255) aTCACCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGCCATGCTTTAATCAGACGAt < 1:734042/140‑1 (MQ=255) aCCGGCCATCGTCAATTCATTGTGCTCAAACGATGTGTTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGCCATGCTTTAATCAGACGATTAg < 1:314824/140‑1 (MQ=255) aCCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGCCATGCTTTAATCAGACGATTAg < 2:828735/140‑1 (MQ=255) aCCGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAAAAACGACGTTCATCTCGGGTTTCTGACATGCTTTAATCAGACGATTAg > 2:314824/1‑140 (MQ=255) aCCGGCCATCGTCAAGTCATTGCGCCCAAGCGATGTGCTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGCCATGCTTTAATCAGACGATTAg < 1:295375/140‑1 (MQ=255) cGGCCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGCCATGCTTTAATCAGACGATTAGTa > 2:676646/1‑140 (MQ=255) | TCGGTATAGATCTCTTTTCCGCCAGGTTTGAGTAATTCCGCAAGATCGGCAAACACGTCAAAATCGTTACGCGCTTCAAATTGCGGAGCAACAGCCTGCTTCATCGGCACAATATGCTGGTTGCTGTAATCACCGGTCATCGTCAAGTCATTGCGCTCAAACGATGTGGTGATCGGTAATACGATATCTGCGTGTTTGGCTGCTGCGGTCCAGTAGCATTCAGAAACGACGATCATCTCCGGTTTCTGCCATGCTTTAATCAGACGATTAGTA > NC_000913/1955323‑1955595 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |