| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,611,879 | A→G | Q5Q (CAA→CAG) | yhhT → | putative transporter YhhT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,611,879 | 0 | A | G | 98.4% | 222.1 / NA | 64 | Q5Q (CAA→CAG) | yhhT | putative transporter YhhT |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (35/28); minor base C (0/1); total (35/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.53e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTACAACAGTGTTTCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATTGTGCAGCTGTTACTGGCGCTGTTTTTTGCCATCGTCCTCAACCCGCTCG > NC_000913/3611750‑3612015 | ttACAACAGTGTTTCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATaaaa < 1:779089/140‑1 (MQ=255) acaacaGTGTTTCATTTTTACCGCGTGCTGAAGTGTAAACCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACg < 2:317271/140‑1 (MQ=255) aacaGTGTTTCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACggg < 1:42118/140‑1 (MQ=255) acaGTGTTTCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGc > 1:800249/1‑140 (MQ=255) caGTGTTTCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAAGGGAGACGCCTCAGCCCGATAAAACGGGCa > 1:317271/1‑140 (MQ=255) gtgtTTCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATg > 2:174003/1‑140 (MQ=255) gtgtTTCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATg > 1:772961/1‑140 (MQ=255) gtgtTTCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATg > 2:454506/1‑140 (MQ=255) tgtTTCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGc < 1:571077/140‑1 (MQ=255) tgtTTCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGc < 2:66085/140‑1 (MQ=255) tttCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATg > 2:507027/1‑137 (MQ=255) tttCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATg < 1:507027/137‑1 (MQ=255) tttCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGcac > 1:742847/1‑140 (MQ=255) cATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACAtt > 2:453549/1‑140 (MQ=255) cATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACAtt < 2:146988/140‑1 (MQ=255) aCCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACAtt > 2:754244/1‑133 (MQ=255) aCCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACAtt < 1:754244/133‑1 (MQ=255) tGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTgg < 2:772961/140‑1 (MQ=255) gCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGc < 1:454506/140‑1 (MQ=255) cGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAACCGGGCATGCACATTCTGCTCAAGCTGGCCTCGc < 2:437848/140‑1 (MQ=255) cGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGc < 1:509042/140‑1 (MQ=255) cGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGc < 1:174003/140‑1 (MQ=255) aaaaTCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGt > 2:695280/1‑140 (MQ=255) aaTCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAg < 2:800249/140‑1 (MQ=255) aGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGt < 1:837707/127‑1 (MQ=255) aGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGt > 2:837707/1‑127 (MQ=255) aGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTcgcg < 1:453549/140‑1 (MQ=255) aaTATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCa > 1:182158/1‑140 (MQ=255) atTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGc < 2:182158/140‑1 (MQ=255) ttGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCa > 1:478425/1‑140 (MQ=255) ttGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCa > 1:777324/1‑140 (MQ=255) ttGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCa > 1:790557/1‑140 (MQ=255) ttGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCa > 1:441997/1‑140 (MQ=255) ttGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCa > 2:552365/1‑140 (MQ=255) tGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTTGCCTCGCAGGTCGTAATCCTCGCGGGCATTCACGCAg > 1:304601/1‑140 (MQ=255) tGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAg > 2:153350/1‑140 (MQ=255) cTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCg < 1:482275/140‑1 (MQ=255) cTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTACTCAAGCTTGCCGCACGCGTAGTGAACCTCCTGGGCATTAACGCAGCg > 2:421479/1‑140 (MQ=255) gCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCg > 1:533359/1‑137 (MQ=255) gCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCg < 2:533359/137‑1 (MQ=255) gCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCa > 1:754878/1‑140 (MQ=255) gCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCa > 1:600958/1‑140 (MQ=255) gACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGata > 1:717177/1‑140 (MQ=255) tCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCa < 2:742847/140‑1 (MQ=255) cTACACTTAATACAAAAGGTCATAAGGAAGCACCATTGGAAACCCCTCTGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATtgtg < 2:360236/140‑1 (MQ=255) acacTTAATACAAAAAGTCACAGGGAAGCCCCAATTGAAGCCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATTGTGCa < 2:304601/140‑1 (MQ=255) acacTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATTGTGCa < 1:703329/140‑1 (MQ=255) cTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATTGTGCAGCt > 2:641232/1‑140 (MQ=255) aaTACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATTGTGCAGCTGtt > 1:759597/1‑140 (MQ=255) aaTACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATTGTGCAGCTGtt > 1:701034/1‑140 (MQ=255) tACAAAAAGTCACAAGGCAGCCTCAATGGAAACCCTTCACCCCGATAACACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATTGTGCAGCTGTTAc < 2:261680/140‑1 (MQ=255) tACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATTGTGCAGCTGTTAc < 2:777324/140‑1 (MQ=255) gTCACAAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATTGTGCAGCTGTTACTGGCGCTg > 1:865560/1‑140 (MQ=255) cacaAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATTGTGCAGCTGTTACTGgcg > 2:243/1‑135 (MQ=255) cacaAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATTGTGCAGCTGTTACTGgcg < 1:243/135‑1 (MQ=255) cacaAGGAAGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGAAATCGTTGTGCAGCGGTTACTGGCGCTGtt > 1:261680/1‑140 (MQ=255) aaGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATTGTGCAGCTGTTACTGGCGCTGTTTTTTGcc > 2:441989/1‑140 (MQ=255) aGCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATT‑TGCAGCTGTTACTGGCGCTGTTTTTTGCCAt < 2:600958/140‑1 (MQ=255) gCCCCAATGGAAACCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATTGTGCAGCTGTTACTGGCGCTGTTTTTTGCCAt > 1:565847/1‑140 (MQ=255) aaCCCCTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATGTCATTGTGTAGCCGGTAGTGGCGCTTTTTTTGGCCATCGTCCTCAAcc > 2:415473/1‑140 (MQ=255) ccTCAGCCCGATAAACCGGGCAAGCGCATTCTGCTCATGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATTGTGCAGCTGTTACTGGCGCTGTTTTTTGCCATCGTCCTCAACCCGCt < 1:421479/140‑1 (MQ=255) cTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATTGTGCAGCTGTTACTGGCGCTGTTTTTTGCCATCGTCCTCAACCCGCTc > 2:174692/1‑140 (MQ=255) cTCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCA‑TGTGCAGCTGTTACTGGCGCTGTTTTTTGCCATCGTCCTCAACCCGCTCg > 1:554343/1‑140 (MQ=255) tCAGCCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATTGTGCAGCTGTTACTGGCGCTGTTTTTTGCCATCGTCCTCAACCCGCTCg < 1:441989/140‑1 (MQ=255) | TTACAACAGTGTTTCATTTTTACCACGTGCTGACGTGAAAATCAGCAGTAAGAATCAGAATATTGCTGGCGTGACTCCCGCTACACTTAATACAAAAAGTCACAAGGAAGCCCCAATGGAAACCCCTCAACCCGATAAAACGGGCATGCACATTCTGCTCAAGCTGGCCTCGCTGGTAGTGATCCTCGCGGGCATTCACGCAGCGGCAGATATCATTGTGCAGCTGTTACTGGCGCTGTTTTTTGCCATCGTCCTCAACCCGCTCG > NC_000913/3611750‑3612015 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |