Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 3,852,262 | G→A | Q175* (CAA→TAA) | ilvB ← | acetohydroxy acid synthase I subunit IlvB |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,852,262 | 0 | G | A | 98.2% | 182.9 / NA | 56 | Q175* (CAA→TAA) | ilvB | acetohydroxy acid synthase I subunit IlvB |
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (24/31); minor base T (0/1); total (24/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGA > NC_000913/3852125‑3852394 | gccgccCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTAca < 1:526396/140‑1 (MQ=255) gccgccCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGAGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTAca > 2:203460/1‑140 (MQ=255) gccgccCAGATAAAGAACCGGGCGTCTGGCAGCGTTACTCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTAca < 1:226255/140‑1 (MQ=255) cgccCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTAcaca > 1:179495/1‑140 (MQ=255) cgccCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTAcaca > 1:752542/1‑140 (MQ=255) cgccCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTAca > 1:192659/1‑138 (MQ=255) cgccCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTAca < 2:192659/138‑1 (MQ=255) aTAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAg < 2:620816/140‑1 (MQ=255) tAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAgg < 1:790029/140‑1 (MQ=255) tAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAgg < 1:468860/140‑1 (MQ=255) tAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAgg < 2:489370/140‑1 (MQ=255) aaaGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGa < 1:482657/140‑1 (MQ=255) gCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATg > 1:816514/1‑140 (MQ=255) gCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATg < 2:752542/140‑1 (MQ=255) ccGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGGCt > 1:802248/1‑140 (MQ=255) cGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATg < 2:683825/136‑1 (MQ=255) cGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATg > 1:683825/1‑136 (MQ=255) cGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTa > 2:37964/1‑140 (MQ=255) gggCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTAt > 1:654333/1‑140 (MQ=255) gggCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTAt > 1:672351/1‑140 (MQ=255) gggCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTAt > 1:198803/1‑140 (MQ=255) gggCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTAt > 1:142326/1‑140 (MQ=255) gggCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCACAAAAACTGCCGTTAACACATACTTAGGAATGTCTAt > 1:258658/1‑140 (MQ=255) gggCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCACAAAAACGGCCATTGACACATCCTTAGGAATGTCTAt > 1:349171/1‑140 (MQ=255) gggCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCACAAAAACCGCCGTTTACACATGCTTAGGAATTGCTAt > 1:366631/1‑140 (MQ=255) ttGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCacac < 1:61322/140‑1 (MQ=255) gCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGcc > 1:761742/1‑140 (MQ=255) gTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTg > 1:515683/1‑140 (MQ=255) cgccgcTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGCTTACACATCCTAAGGAATGTCTATCCACACCGGGCCTGGGCGGcccg > 2:492402/1‑138 (MQ=255) ccgcTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGAt > 1:721650/1‑140 (MQ=255) cgcTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGAtt < 1:801798/140‑1 (MQ=255) cGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCa < 1:37964/140‑1 (MQ=255) ttcttcGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCAt < 1:67917/140‑1 (MQ=255) gCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCa < 1:492402/140‑1 (MQ=255) cTAAAGGCGGGGGCGGCGGCTTGTTCTGCCAAAGCAGGCCGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCAt < 2:349171/140‑1 (MQ=255) gggggCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCAt < 2:473547/125‑1 (MQ=255) gggggCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCAt > 1:473547/1‑125 (MQ=255) ggcggcggcTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGa > 1:560736/1‑140 (MQ=255) ggcggcggcTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGa < 1:832895/140‑1 (MQ=255) ggcggcggcTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGa > 1:728428/1‑140 (MQ=255) ggcggcggcTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGa < 1:676710/140‑1 (MQ=255) ggcggcggcTTTTTCTGCCATAGCGGGCTGTGTTTCAATCCCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGa < 2:560736/140‑1 (MQ=255) ccggcggcTTTTTCTGCTATAGTGGGCTGTGGTTCTATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAg < 2:366631/139‑1 (MQ=255) cTTTTTCTGCCATAGCGTGCTGCGTTTCAATCTCACAAATTGCCGTTTTCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCg < 2:258658/140‑1 (MQ=255) tttttCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGa < 1:188556/140‑1 (MQ=255) tCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGATATg < 2:761742/140‑1 (MQ=255) cTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGATATGt < 2:672351/140‑1 (MQ=255) gCCATAGCGGGCTGTTTTTCAACCTAAAAGACTGCCGGTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGATATGTCt < 1:390874/140‑1 (MQ=255) gaTAGCGGGCTGTGTTTCAATCTCAAAAACTACCGATTAAACATCCTTTGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGATATGTCTGa < 2:231336/139‑1 (MQ=255) cATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGATATGTCTGa < 2:198803/140‑1 (MQ=255) aGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGATATGTCTGACCa < 2:142326/140‑1 (MQ=255) aGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGATATGTCTGACCa < 2:721650/140‑1 (MQ=255) tgtTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACGTGCGGGAATTCGTCTATATGTATGACCAGATAGTtgc > 1:231336/1‑139 (MQ=255) tgtTTCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGATATGTCTGACCAGATAGTtgt > 2:505322/1‑140 (MQ=255) ttCAATCTCAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGATATGTCTGACCAGATAGTTGTGtt < 2:179495/140‑1 (MQ=255) tcAAAAACTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGATATGTCTGACCAGATAGTTGTGTTTGGTGAt < 2:654333/140‑1 (MQ=255) cTGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATa < 2:816514/140‑1 (MQ=255) tGCCTTTTTGACATCCTTAGGAATGGCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCCAGGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGATATGTCTGACCAGATAGTTGTGTTTGGGGTTGGGGATaa > 2:773171/1‑139 (MQ=255) tGCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGGGTTCTTCGATATTTCTGACCAGATACTTGTGTTTGGTGATGGGGATag > 2:301138/1‑140 (MQ=255) gCCGTTTACACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATaga > 2:801409/1‑140 (MQ=255) | GCCGCCCAGATAAAGCACCGGGCGTTTGGCAGCGTTAATCATCGCCGCTGCGTCACGAATGCTTTCTTCGCTAAAGGCGGGGGCGGCGGCTTTTTCTGCCATAGCGGGCTGTGTTTCAATCTCAAAAACTGCCGTTTGCACATCCTTAGGAATGTCTATCCACACCGGGCCTGGGCGGCCTGATTGCGCAATGCGGAAGGCATCGCTCATGACCTGCGGGAGTTCTTCGATATGTCTGACCAGATAGTTGTGTTTGGTGATGGGGATAGA > NC_000913/3852125‑3852394 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |