| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,939,901 | A→G | L238L (TTA→CTA) | hsrA ← | putative transporter HsrA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,939,901 | 0 | A | G | 98.0% | 169.5 / ‑4.4 | 51 | L238L (TTA→CTA) | hsrA | putative transporter HsrA |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (30/20); total (31/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.53e-01 | |||||||||||
CGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTC > NC_000913/3939767‑3940035 | cGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTCCGTCGTGCATGCAGGATATAGCGAAGCAGTAGCCCGa > 1:416783/1‑140 (MQ=255) gTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATg > 1:86070/1‑140 (MQ=255) caGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGt < 2:86070/140‑1 (MQ=255) caGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGCCGTGCGTCGTGCATGGGGAATATAGAGAAGGAGTAGCCCGATGCTGGt > 2:378799/1‑140 (MQ=255) aGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTg > 1:525231/1‑140 (MQ=255) gCCGGTCCCCAGACGGGTTGCATTATTGCCTCCCACACCCATCGAGAACGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGa < 2:416783/140‑1 (MQ=255) ccGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGAc > 2:43615/1‑140 (MQ=255) cGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACa > 2:748588/1‑140 (MQ=255) gTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGTATACAGAGAAGCGGTAGGCCGATGCTGGTGACAAt > 2:403586/1‑140 (MQ=255) gTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAAt > 2:25217/1‑140 (MQ=255) gTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAAt > 1:814274/1‑140 (MQ=255) aGACGGGTTGCAATATTGCCTATGATACCGATCGACAAACTGCGGGTTCTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGt < 2:232494/140‑1 (MQ=255) ttGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGATTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCa > 2:799110/1‑140 (MQ=255) aaTATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATC‑AATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCa > 2:515963/1‑140 (MQ=255) ttGCCTACTATACCGATCGAGAGAGTGCGGTTTTTCAATGAATCTAATAAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCt < 2:415537/140‑1 (MQ=255) ccTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGc < 1:741481/140‑1 (MQ=255) tCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTcc < 2:525231/140‑1 (MQ=255) gaAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTCCCGTCAAGGCAATCCAGCTGGGGACAATCTTTTCCCCGa > 2:277200/1‑140 (MQ=255) aaaGTGCGGGTTTTACATAAATCTACTGACATTAATGTGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGaa < 1:241527/140‑1 (MQ=255) aaaGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGaa < 2:55804/140‑1 (MQ=255) aaaGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGaa < 1:481671/140‑1 (MQ=255) cGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGCCAATCCAACTGCCGACAATCTATTCCCCGAATAGctc > 1:319752/1‑140 (MQ=255) tttAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTc < 1:436157/140‑1 (MQ=255) aaataaatCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGc < 1:43615/140‑1 (MQ=255) tCTAATGAAATTAATGGTTTTGTCGTGCGTCATGCCTGGTGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaa < 2:319752/140‑1 (MQ=255) tCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaa < 1:796304/140‑1 (MQ=255) tCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaa < 2:814274/140‑1 (MQ=255) agcaaTGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaa < 1:515963/137‑1 (MQ=255) tGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaagagaa > 1:740344/1‑140 (MQ=255) tAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGc < 2:740344/140‑1 (MQ=255) aTGGGTTTGGCGTGCATCGTGCATGCAGATTATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTg < 1:403586/140‑1 (MQ=255) cgtgcgtCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACa > 1:206101/1‑140 (MQ=255) gcgtCGTGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCa > 2:484975/1‑140 (MQ=255) cgtcgtGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCaa > 1:626892/1‑140 (MQ=255) cgtcgtGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCaa > 2:702892/1‑140 (MQ=255) cgtcgtGCATAGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAGTAGCTCTACTCCACTTTAGAAGAGAGCAAGGCTGAGGCCAAACAGCaa > 2:307934/1‑140 (MQ=255) tGCATGGAGAATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCCCTATTCCGATTGAGAAAAGAACAAGGCTGAGGCCAAACAGCAAAAAGc > 2:302745/1‑140 (MQ=255) gagaATATAGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGa > 1:755529/1‑140 (MQ=255) tataGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCg > 2:668978/1‑140 (MQ=255) ataGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGa > 2:42131/1‑140 (MQ=255) ataGAGAAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGa > 2:821755/1‑140 (MQ=255) agagAAGCAGTAGCCCGATGCTTGTAACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAAt < 1:302745/140‑1 (MQ=255) agaAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCt < 1:214937/140‑1 (MQ=255) agaAGCAGTAGCCCGATGCTGGTCACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCt > 1:118164/1‑140 (MQ=255) gaAGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTg > 1:716087/1‑140 (MQ=255) aGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcg > 1:658001/1‑140 (MQ=255) aGCAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcg > 1:87407/1‑140 (MQ=255) cAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGATCAAGGCTGAGGCAAAAGAGCAAAAATCCAGTGATATCGAATCTGcgtc > 2:315837/1‑140 (MQ=255) cAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcgtc < 1:668978/140‑1 (MQ=255) cAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcgtc > 1:593992/1‑140 (MQ=255) cAGTAGCCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCACGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcgtc > 2:209071/1‑140 (MQ=255) cAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcgtc > 2:631/1‑140 (MQ=255) | CGGTACACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTC > NC_000913/3939767‑3940035 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |