| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,263,602 | C→T | V210V (GTG→GTA) | qorA ← | putative quinone oxidoreductase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,263,602 | 0 | C | T | 97.6% | 124.0 / ‑4.3 | 42 | V210V (GTG→GTA) | qorA | putative quinone oxidoreductase 1 |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (21/20); total (22/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.86e-01 | |||||||||||
TAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGTTCCTACGGTGCCGATAAGTTTCGCG > NC_000913/4263482‑4263737 | taggTTCACCCCTGTAACCGCGCCTGATGAGTTCCCAAAACTGCCCATTAAGCCGCGGCGTTACAGGCAACCCAGCGTCCGTTCCCAGGTGTTTCTGCCCACGGAATCTTACAGCACGCTTACTTACTTACCGCCGGTGa < 2:142100/137‑1 (MQ=255)tAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGa < 2:681902/140‑1 (MQ=255) cacCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCGACGGAATCGTACGCCATGCGTACTTGCTTAGCGCCGGTGATCTCtttt > 2:262846/1‑140 (MQ=255) cacCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCtttt > 2:542717/1‑140 (MQ=255) gTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCg > 1:162809/1‑140 (MQ=255) tAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCAAGCGCACTTTCTCACCGCCGGTCATCTCTTTTAACCGc > 1:314864/1‑140 (MQ=255) caCCCCACCTGATGCGTTCCCAAAATGGACCTTTAGGCCGGGGCGGTGCGGGCCATCCAGCGACCCTCCCCAGGTGTCCCTTCCCCCGGCATCGTCCCACACGGGTCCTTTCCGCCCGCCGGTGATCTCTTTTAGCCgat < 2:218316/139‑3 (MQ=255) aaCCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCt < 1:626456/140‑1 (MQ=255) aaCCGCACCTGATGACTTGCCACAAATGACCATTAAGTCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCt < 1:240287/140‑1 (MQ=255) gCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGAc > 1:576671/1‑140 (MQ=255) cTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGa > 1:551772/1‑140 (MQ=255) gTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCtt < 1:474167/140‑1 (MQ=255) tGCCAAAACTGCCCATTAGGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGCCTCTGCCCACGGAATCGTCCACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCa < 2:508463/140‑1 (MQ=255) tGCCAAAACTGACCATTGAGCCGCGGCGTTGCAGGCAATGCAGCGACCCTTCCCAGGTGTCTCTGCCCCCGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCa < 2:238398/140‑1 (MQ=255) tGCCAAAACTGACCATTAAGCCGCGGCGTTGGAGGCAAAACAGCGACCATCCCCAGGTGTCTCTGCCCACGGAATCGTGCACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCa < 2:306524/140‑1 (MQ=255) gCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTGTCTTACCGCCGGTGATATCTTTTAAACGCTTGACCAGATCCTCTTCAc > 2:378666/1‑140 (MQ=255) ccAAAACTGACCATTGAGCCGCGGCCTTGTAGGCAATACAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACg < 1:378666/140‑1 (MQ=255) cAAACCTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTCCTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGa < 2:629397/140‑1 (MQ=255) cAAAACTGACCATTACGCCGCGTCGCTGCTGGCAATCTAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGa < 1:262846/140‑1 (MQ=255) cAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGa < 1:507586/140‑1 (MQ=255) aaaaCTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGAt > 1:698314/1‑140 (MQ=255) aaaaCTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGAt < 1:542717/140‑1 (MQ=255) ccATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTtaata > 2:186074/1‑140 (MQ=255) cggcgTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCAcgc > 1:531953/1‑140 (MQ=255) cggcgTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGAACACCACGCGTACTTTCTTACCGCCGGCGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCAcgc > 2:461982/1‑140 (MQ=255) cgTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACCCCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGcc < 1:196978/140‑1 (MQ=255) ttGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCg > 2:862644/1‑140 (MQ=255) cAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCtt < 2:531953/140‑1 (MQ=255) aaTCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAgc < 2:647734/140‑1 (MQ=255) aGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGct > 1:791820/1‑140 (MQ=255) gCGACCGTCCCGAGGTGTTTCTCCCCAAGGAATCGTACACCTGGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTAGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGctc < 2:551772/140‑1 (MQ=255) gACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTg > 1:531674/1‑140 (MQ=255) ttCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCtt > 1:184856/1‑140 (MQ=255) ggTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTgcg < 2:531674/140‑1 (MQ=255) ggTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTgcg < 1:862644/140‑1 (MQ=255) ggTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTgcg < 2:576671/140‑1 (MQ=255) ggTGTCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTgcg < 2:162809/140‑1 (MQ=255) gtgtCTCTGCCCACGGAATCGTACCCCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCTACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTgcgc < 2:459174/140‑1 (MQ=255) gtgtCTCTGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTgcgc < 2:114390/140‑1 (MQ=255) tctcTGCCCACAGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGt > 1:769884/1‑140 (MQ=255) tctGCCCACGGAATCGTACACCACGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGTTc > 1:453093/1‑140 (MQ=255) accacGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGTTCCTACGGTGCCGATAAGttt > 1:664003/1‑140 (MQ=255) ccacGCGTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGTTCCTACGGTGCCGATAAGTTTc < 2:664003/140‑1 (MQ=255) cgcgTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGGTTTTTGCACGGCTCGTACGGTCCCGATAAGTTTcgcg > 1:316170/1‑140 (MQ=255) cgcgTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGTTCCTACGGTGCCGATAAGTTTcgcg > 2:530934/1‑140 (MQ=255) cgcgTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGTTCCTACGGTGCCGATAAGTTTcgcg > 2:588502/1‑140 (MQ=255) cgcgTACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGTTCCTACGGTGCCGATAAGTTTcgcg > 2:761653/1‑140 (MQ=255) | TAAGTTCACACCGGTAACCGCACCTGATGAGTTGCCAAAACTGACCATTAAGCCGCGGCGTTGCAGGCAATCCAGCGACCGTTCCCAGGTGTCTCTGCCCACGGAATCGTACACCACGCGCACTTTCTTACCGCCGGTGATCTCTTTTAACCGCTCGACCAGATCCTCTTCACGATAGTTAATAACCTGCCACGCGCCCGCTTTTAGCGCGCTCTGCGCTTTTTGCGCGGTTCCTACGGTGCCGATAAGTTTCGCG > NC_000913/4263482‑4263737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |