| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,568,725 | C→T | intergenic (‑206/‑273) | mdtM ← / → rpnD | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter/truncated recombination‑promoting nuclease‑like protein RpnD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,568,725 | 0 | C | T | 97.9% | 156.5 / NA | 47 | intergenic (‑206/‑273) | mdtM/rpnD | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter/truncated recombination‑promoting nuclease‑like protein RpnD |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (26/20); minor base G (0/1); total (26/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGAAAGGGGAATATCTGCCGGGTACAGGACATGTAAAACGCGAGC > NC_000913/4568588‑4568857 | aaGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGtac > 2:678245/1‑140 (MQ=255) aGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTac < 2:69518/140‑1 (MQ=255) aaGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCtt > 1:21876/1‑140 (MQ=255) ggCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGaa < 1:678245/140‑1 (MQ=255) cAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGTGTCAGAATGTATAACGATTACAAATAGTCATGAGTATTTTACACCTCTTGAAtt > 2:375859/1‑140 (MQ=255) cAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAAtt > 1:590290/1‑140 (MQ=255) aaaTGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCAt < 2:590290/140‑1 (MQ=255) aaaTGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCAt < 1:744797/140‑1 (MQ=255) gTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCAt < 1:844993/136‑1 (MQ=255) gTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCAt > 2:844993/1‑136 (MQ=255) tGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAata < 1:434696/140‑1 (MQ=255) tGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAata < 2:107500/140‑1 (MQ=255) aaTTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAAtata > 1:536223/1‑140 (MQ=255) aaTTTCATGTAATCAACAACACCGCCTGTGACCACCCAGCCAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAAtata < 2:240761/140‑1 (MQ=255) tCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACAcc > 2:607439/1‑140 (MQ=255) cATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACAGCTCTTGAGTTGGTGCGTTGCAGAGAAAATATACACCt > 1:240761/1‑140 (MQ=255) aaTCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGCACTCATGGGTTGCATAGGAAATATACTCCTTAAgt > 2:420390/1‑140 (MQ=255) aaTCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAg < 1:832106/122‑1 (MQ=255) aaTCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAg > 2:832106/1‑122 (MQ=255) aaTCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGa < 2:153991/123‑1 (MQ=255) aaTCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGa > 1:153991/1‑123 (MQ=255) aCCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAAt > 1:427338/1‑140 (MQ=255) ccTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTg > 1:70991/1‑140 (MQ=255) ccTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTg > 1:788771/1‑140 (MQ=255) tgtgAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCg > 2:166159/1‑140 (MQ=255) cacacaGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAAt > 2:675616/1‑140 (MQ=255) cagacagaGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCaaa > 2:773884/1‑140 (MQ=255) cagaGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAagag < 1:166159/140‑1 (MQ=255) agaAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCgg < 2:574454/124‑1 (MQ=255) agaAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCgg > 1:574454/1‑124 (MQ=255) gaAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGcgcg < 2:545030/140‑1 (MQ=255) aCTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGa < 2:427338/140‑1 (MQ=255) aCTTTCTGAATTAGGGTCAGAATGTATAACGAATACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGa < 2:536223/140‑1 (MQ=255) tCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGaa < 1:764399/137‑1 (MQ=255) tCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGaa > 2:764399/1‑137 (MQ=255) tGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAGAATTTGCGGTTGATTAAAAGAGCGCGGTGGAAAgggg > 1:244344/1‑140 (MQ=255) cGGGTCAGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTTATTAAAATTTGCGGTTTATCAAAAGTGCGCGGTGGAAAGGGGAATATc > 2:263563/1‑140 (MQ=255) tCAGAATGTATAACGCTTACAAGTATTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGAAAGGGGAATATCTGcc < 1:420390/140‑1 (MQ=255) aGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGAAAGGGGAATATCTGcc < 2:803548/138‑1 (MQ=255) aGAATGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGAAAGGGGAATATCTGcc > 1:803548/1‑138 (MQ=255) aaTGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGAAAGGGGAATATCTGCCGGGt > 2:202004/1‑140 (MQ=255) aaTGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGAAAGGGGAATATCTGCCGGGt < 2:70991/140‑1 (MQ=255) aTGTATAACGATTACAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGAAAGGGGAATATCTGCCGGGTa < 2:21876/140‑1 (MQ=255) tataACGATTACAAATAGTCATCAGGACACTACACCTGTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGAAAGGGGAATATCTGCCGGGTACAg < 1:375859/140‑1 (MQ=255) aCAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGAGGAAAGGGGAATATATGCCGGTTACAGGACATGTaaa > 1:354344/1‑140 (MQ=255) aCAAATAGTCATCAGTACATTACACCTCTTGAATTGATGGGCTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGAAAGGGGAATATCTGCCGGCTACAGGACATGTaaa > 1:303144/1‑140 (MQ=255) tcatcaGTACATTACACCTCTTGAGTTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGAAAGGGGAATATCTGCCGGGTACAGGACATGTAAAACGCGAGc > 2:578342/1‑140 (MQ=255) tcatcaGTACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGAAAGGGGAATATCTGCCGGGTACAGGACATGTAAAACGCGAGc > 2:189217/1‑140 (MQ=255) | AAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGAAAGGGGAATATCTGCCGGGTACAGGACATGTAAAACGCGAGC > NC_000913/4568588‑4568857 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |