| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,054,270 | C→T | A637T (GCC→ACC) | torS ← | sensory histidine kinase TorS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,054,270 | 0 | C | T | 96.4% | 79.6 / NA | 28 | A637T (GCC→ACC) | torS | sensory histidine kinase TorS |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (11/16); minor base A (1/0); total (12/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGTGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGCCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCGCTTACCTGCACAAATGGCTGGAAGATTTCTGCCAGTTTCGCGGGATCAATACCGCAGCCGCTGTCTTCCACTTCGACCAGCCAT > NC_000913/1054135‑1054403 | aaCCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGTGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGa > 2:604654/1‑140 (MQ=255) tCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGTGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCt > 1:115408/1‑140 (MQ=255) cACCGCCTGATTGACTGTTTTTGGCACGGGTGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATag > 1:735052/1‑140 (MQ=255) aCCGCCTGATTGACTGTTTTTGGCACGGGTGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATagt < 2:172069/140‑1 (MQ=255) ccGCCTGATTGACTGTTTTTGGAACGGGTTCCGTGGCCACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATagtc < 1:378840/140‑1 (MQ=255) cGCCTGATTGACTGTTTTTGGCACGGGTGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCAACGCTTGTGTCAGATGGCTACTGATagtca > 1:286779/1‑140 (MQ=255) ccTGATTGACTGTTTTTGGCACGGGTGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCCCTCAGTTCGCCGACCACCGCCTGGGACAGAGGGCTACTGATagtcagt > 2:332331/1‑140 (MQ=255) cTGATTGACTGTTTTTGGCACGGGTGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGACTGAGTGAGACGGGTACTGATagtcagtc > 1:229907/1‑140 (MQ=255) tGTTTTTGGCACGGGATCCGTGGCAACACGTAACGGCAAGCGCAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGATCAGTTCGACGCCCATCGCCTGGGTTAGACGGCTGCTGAGAGTCAGTCCCAGCCCgg > 2:246885/1‑140 (MQ=255) gTTTTTGGCACGGGTGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGt > 1:168471/1‑140 (MQ=255) gggTGCCGTGGCAACACGTAACGGCAAGCGTAAATAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGTCTACTGAAAGTAAGGCCCAGCACGGTGCCGCCGCGtt > 1:397262/1‑140 (MQ=255) gggTGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGtt < 1:568899/140‑1 (MQ=255) ccGTGGCAACACGTACCGGCAAACGCAAACAAAAACACCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCg < 1:246885/140‑1 (MQ=255) ccGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCg < 1:604654/140‑1 (MQ=255) gCAACACGTAACGGCCAGCGTATACTAAAACAGCTTCTAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCGCTTAc < 1:329951/140‑1 (MQ=255) gCAACACGTAACGGCCAGCGTACACAAAACCAGCTTCAAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCGCTTAc < 1:263567/140‑1 (MQ=255) gCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCGCTTAc < 2:168471/140‑1 (MQ=255) acacGTAACGGCAAGTGTAAACGAATACAGCTTCCAAGCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCGCTTACCTg < 1:332331/140‑1 (MQ=255) tAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCGCTTACCTGCACaa < 2:115408/140‑1 (MQ=255) gCAAGCGTAAATAAAACCAGCTCCCAACCTCCGGCCTGCCGGTGGCGCACAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCGCTTACCTGCACAAATGGc < 2:397262/140‑1 (MQ=255) gCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCGCTTACCTGCACAAATGGCTGGa < 1:430904/140‑1 (MQ=255) aaaaCAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCGCTTACCTGCACAAATGGCTGGAAGATTTCTg > 1:102611/1‑140 (MQ=255) aaaCAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCGCTTACCTGCACAAATGGCTGGAAGATTTCTGc > 2:425785/1‑140 (MQ=255) ccAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCGCTTACCTGCACAAATGGCTGGAAGATTTCTGCCAGTTTcgc < 1:73131/140‑1 (MQ=255) ccAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCGCTTACCTGCACAAATGGCTGGAAGATTTCTGCCAGTTTcgc < 1:75354/140‑1 (MQ=255) cGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCGCTTACCTGCACAAATGGCTGGAAGATTTCTGCCAGTTTCGCGGGATCaa > 2:183120/1‑140 (MQ=255) ccaggcTCAGTTCGCCACCCATCGGCTGGGTCAGCCGGCTACTGATAGTCAGTCCCAGCGCGGTGCCCACGCGGTTGCCGCTTACCTGCACAAATGGCTGGAAGATTTCTGCCAGTTTCGCGGGATCAATACCGCAGCCg < 2:811808/136‑1 (MQ=255) cgccCATCGCCTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCGCTTACCTGCACAAATGGCTGGAAGATTTCTGCCAGTTTCGCGGGATCAATACCGCAGCCGCTGTCTTCCAcctgt > 1:811808/1‑136 (MQ=255) tCGCCTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCGCTTACCTGCACAAATGGCTGGAAGATTTCTGCCAGTTTCGCGGGATCAATACCGCAGCCGCTGTCTTCCACTTCGACCAGc < 1:2280/140‑1 (MQ=255) ccTGGGTCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCGCTTACCTGCACAAATGGCTGGAAGATTTCTGCCAGTTTCGCGGGATCAATACCGCAGCCGCTGTCTTCCACTTCGACCAGCCAt < 1:183120/140‑1 (MQ=255) | AACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGTGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTGGGCCAGACGGCTACTGATAGTCAGTCCCAGCCCGGTGCCGCCGCGTTTGCCGCTTACCTGCACAAATGGCTGGAAGATTTCTGCCAGTTTCGCGGGATCAATACCGCAGCCGCTGTCTTCCACTTCGACCAGCCAT > NC_000913/1054135‑1054403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |