Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,420,131	T→C	Q37Q (CAA→CAG)	racR ←	Rac prophage; DNA‑binding transcriptional repressor RacR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,420,131	0	T	C	100.0%	295.6 / NA	83	Q37Q (CAA→CAG)	racR	Rac prophage; DNA‑binding transcriptional repressor RacR
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (43/40);  total (43/40)

GGGGTTGGTATGGGGTATTCGTTAAGCCCCCAATGCTCTGGACCAACAACATCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGTTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATT  >  NC_000913/1420000‑1420266                                                                                                                                    |                                                                                                                                        ggggTTGGTATGGGGTATTCGTTAAGCCCCCAATGCTCTGGACCAACAACATCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACttt                                                                                                                                 >  2:656552/1‑140 (MQ=255)     ttGGTATGGGGTATTCGTTAAGCCCCCAATGCTCTGGACCAACAACATCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAg                                                                                                                             <  1:23671/140‑1 (MQ=255)        gTATGGGGTATTCGTTAAGCCCCCAATGCTCTGGACCAACAACATCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAAGCCAGTCAAAAAATGGTGGTGGCTGGACTTTAAAGTgg                                                                                                                          >  1:311144/1‑140 (MQ=255)            ggggTATTCGTTAAGCCCCCAATGCTCTGGACCAACAACATCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTg                                                                                                                      >  2:106510/1‑140 (MQ=255)             gggTATTCGTTAAGCCCCCAATGCTCTGGACCAACAACATCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGc                                                                                                                     >  1:123509/1‑140 (MQ=255)             gggTATTCGTTAAGCCCCCAATGCTCTGGACCAACAACATCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGc                                                                                                                     >  2:523615/1‑140 (MQ=255)                     gTTAAGCCCCCAATGCTCTGGACCAACAACATCAGAAAAGAAACGCAATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCg                                                                                                             >  2:835759/1‑140 (MQ=255)                            ccccAATGCTCTGGACCAACAACATCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCtttga                                                                                                      >  1:192135/1‑140 (MQ=255)                             cccAATGCTCTGGACCAACAACATCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCtttgat                                                                                                     <  1:656552/140‑1 (MQ=255)                                aaTGCTCTGGACCAACAACATCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTATAGTTGCCTGCGACATCCGCCtttgatttg                                                                                                  >  1:387252/1‑140 (MQ=255)                                       tGGACCAACAACATCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATc                                                                                           >  2:605243/1‑140 (MQ=255)                                         gACCAACAACATCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATccc                                                                                         >  2:719248/1‑140 (MQ=255)                                             aacaacATCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATg                                                                                     <  2:192135/140‑1 (MQ=255)                                              acaacaTCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGc                                                                                    >  1:761362/1‑140 (MQ=255)                                              acaacaTCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGc                                                                                    >  2:68521/1‑140 (MQ=255)                                              acaacaTCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGAATTTAAAGTAGCGAGCGACCTCCGCCATTGAATTGACGGATCCCGATGc                                                                                    >  2:297287/1‑140 (MQ=255)                                                 acaTCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTAAAAGTGGCCTGCAACCTCCGGCCTTGATTTGGCGGATCCCGATGCGAt                                                                                 >  2:328526/1‑140 (MQ=255)                                                   aTCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGAttt                                                                               >  2:59620/1‑140 (MQ=255)                                                     cAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGAttttt                                                                             >  1:661577/1‑140 (MQ=255)                                                      agaaaagaaaCGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGAtttttt                                                                            >  2:751760/1‑140 (MQ=255)                                                             aaaCGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGAGACCTCCGGCTTTGATTTGACGGATCCCGAGGCGATTTTTTTGTTAAt                                                                     >  2:257190/1‑140 (MQ=255)                                                               aCGCCATACTTCTGGAAGTTTATCTTTACTTATAGGGCCTTTCTTAATGCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATgg                                                                   <  2:387252/140‑1 (MQ=255)                                                               aCGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATgg                                                                   >  1:445575/1‑140 (MQ=255)                                                                   cATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTg                                                               <  1:498505/140‑1 (MQ=255)                                                                       aTTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGctct                                                           >  1:731887/1‑140 (MQ=255)                                                                          cTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATc                                                        >  1:88952/1‑140 (MQ=255)                                                                           tGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCg                                                       >  1:14597/1‑140 (MQ=255)                                                                             gacgTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCt                                                     >  2:718517/4‑140 (MQ=255)                                                                             gAAGTTTATCTTTACTTATAGATCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCt                                                     <  1:297287/140‑1 (MQ=255)                                                                             gAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCt                                                     >  2:68489/1‑140 (MQ=255)                                                                             gAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCt                                                     >  1:815280/1‑140 (MQ=255)                                                                             gAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCt                                                     <  1:488693/140‑1 (MQ=255)                                                                             gAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCt                                                     >  2:777756/1‑140 (MQ=255)                                                                             gAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCt                                                     <  1:17912/140‑1 (MQ=255)                                                                             gAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCt                                                     <  2:464102/140‑1 (MQ=255)                                                                                  ttATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGcc                                                >  1:696513/1‑140 (MQ=255)                                                                                  ttATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGcc                                                <  1:106510/140‑1 (MQ=255)                                                                                   tATCTTTACTTATAGAGCCTTTGTTAATCCATTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCt                                               <  2:364903/140‑1 (MQ=255)                                                                                   tATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCt                                               >  2:760987/1‑140 (MQ=255)                                                                                   tATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCt                                               <  1:100221/140‑1 (MQ=255)                                                                                     tCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGTTTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTg                                                               >  2:531718/1‑122 (MQ=255)                                                                                     tCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTg                                                               <  1:531718/122‑1 (MQ=255)                                                                                     tCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTaa                                             <  2:88952/140‑1 (MQ=255)                                                                                     tCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTaa                                             <  1:777756/140‑1 (MQ=255)                                                                                     tCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTaa                                             <  1:68489/140‑1 (MQ=255)                                                                                     tCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTaa                                             <  2:815280/140‑1 (MQ=255)                                                                                     tCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTaa                                             <  1:605243/140‑1 (MQ=255)                                                                                     tCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTaa                                             <  1:4811/140‑1 (MQ=255)                                                                                          aCTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCt                                                     >  2:660736/1‑127 (MQ=255)                                                                                          aCTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCt                                                     <  1:660736/127‑1 (MQ=255)                                                                                          aCTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCtt                                        >  2:15024/1‑140 (MQ=255)                                                                                               taGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCa                                   <  1:523615/140‑1 (MQ=255)                                                                                                 gagCCTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACt                                 <  2:445575/140‑1 (MQ=255)                                                                                                    ccTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAg                              <  1:784293/140‑1 (MQ=255)                                                                                                    ccTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAg                              >  2:784293/1‑140 (MQ=255)                                                                                                    ccTTTCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAg                              <  2:696513/140‑1 (MQ=255)                                                                                                      tttCTTAATCCAGTCATTAATTCATGGTGGCTGGATTTTTAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCa                            <  2:260212/140‑1 (MQ=255)                                                                                                      tttCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTa                                      >  1:528857/1‑130 (MQ=255)                                                                                                      tttCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTa                                      <  2:528857/130‑1 (MQ=255)                                                                                                      tttCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCa                            <  1:835759/140‑1 (MQ=255)                                                                                                      tttCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCa                            <  2:661577/140‑1 (MQ=255)                                                                                                      tttCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCa                            <  1:760987/140‑1 (MQ=255)                                                                                                      tttCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCa                            >  2:28109/1‑140 (MQ=255)                                                                                                      tttCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGCCCTCCGCGTTCGCTCGCCCTACAGCTTTACTACTAAGCa                            >  2:402758/1‑140 (MQ=255)                                                                                                        tCTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTCCTCTATCGCTCGGCCTAAGTCATTACCACTAAGCAtt                          >  1:278998/1‑140 (MQ=255)                                                                                                         cTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGGCTTTGGTTTGACGGATCCCCATGCGATTTTTTTGTTAATGGCCTTCTCTATCTCTCGGCCTAAAGCTTTACCACTAAGCATTg                         >  2:739576/1‑140 (MQ=255)                                                                                                         cTTAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTg                         >  1:52665/1‑140 (MQ=255)                                                                                                           tAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCt                       <  1:718517/140‑1 (MQ=255)                                                                                                           tAATCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCt                       <  2:747312/140‑1 (MQ=255)                                                                                                             aTCCAGTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTa                     <  1:15024/140‑1 (MQ=255)                                                                                                                  gTCATAAATTGATGGTGTCTGGGCTTTAAAGTGGCATGCAACCTCCGCTTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATAtt                <  2:311144/140‑1 (MQ=255)                                                                                                                  gTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATAtt                >  1:802525/1‑140 (MQ=255)                                                                                                                  gTCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATAtt                >  1:608999/1‑140 (MQ=255)                                                                                                                   tCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCa                            >  2:794331/1‑127 (MQ=255)                                                                                                                   tCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCa                            <  1:794331/127‑1 (MQ=255)                                                                                                                   tCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATtc               >  1:175264/1‑140 (MQ=255)                                                                                                                   tCATAAATTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATtc               >  1:484212/1‑140 (MQ=255)                                                                                                                         aTTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTAt         <  1:719248/140‑1 (MQ=255)                                                                                                                         aTTGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTAt         <  1:59620/140‑1 (MQ=255)                                                                                                                          ttGATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATg        <  1:100732/140‑1 (MQ=255)                                                                                                                            gATGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATgcg      <  2:484212/140‑1 (MQ=255)                                                                                                                             aTGGTGGCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATgcgc     >  2:114910/1‑140 (MQ=255)                                                                                                                              tggtggCTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGca    <  2:175264/140‑1 (MQ=255)                                                                                                                              tggtggCTGGACTTTAAAGTGGAGTTCGAACTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGca    <  1:295915/140‑1 (MQ=255)                                                                                                                               ggtggcTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGcat   >  2:18676/1‑140 (MQ=255)                                                                                                                                gtggcTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGcatt  <  1:114910/140‑1 (MQ=255)                                                                                                                                    |                                                                                                                                        GGGGTTGGTATGGGGTATTCGTTAAGCCCCCAATGCTCTGGACCAACAACATCAGAAAAGAAACGCCATAATTCTGGAAGTTTATCTTTACTTATAGAGCCTTTCTTAATCCAGTCATAAATTGATGGTGGTTGGACTTTAAAGTGGCGTGCGACCTCCGCCTTTGATTTGACGGATCCCGATGCGATTTTTTTGTTAATGGCCTGCTCTATCGCTCGGCCTAAGTCTTTACCACTAAGCATTGCTTAATATTCTCCTATGCGCATT  >  NC_000913/1420000‑1420266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑