| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,375,895 | (G)6→5 | coding (1027/1368 nt) | dcuD → | putative transporter DcuD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,375,890 | 0 | G | . | 94.7% | 67.8 / ‑2.7 | 19 | coding (1022/1368 nt) | dcuD | putative transporter DcuD |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base . (10/8); total (11/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCGAAACAATGGACGATGTGCAGGCGTTTTTTGACGGCATGGGTACGCAGTTTGCCAACGTGGTAACGCTGGTGGTCGCGGGTGAAATATTTGCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATCAGGGGGGCGGAGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGGGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTCCGAATATC > NC_000913/3375754‑3376023 | cgcgAAACAATGGACGATGTGCAGGCGTTTTTTGACGGCATGGGTACGCAGTTTGCCAACGTGGTAACGCTGGTGGTCGCGGGTGAAATATTTGCGAAAGGCTTAACGACGATTGGCGCTGTCGGTGCGGTTATCAgggg > 1:236436/1‑140 (MQ=255)cgcgAAACAATGGACGATGTGCAGGCGTTTTTTGACGGCATGGGTACGCAGTTTGCCAACGTGGTAACGCTGGTGGTCGCGGGTGAAATATTTGCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATCAgggg > 1:59482/1‑140 (MQ=255)cgcgAAACAATGGACGATGTGCAGGCGTTTTTTGACGGCATGGGTACGCAGTTTGCCAACGTGGTAACGCTGGTGGTCGCGGGTGAAATATTTGCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATCAgggg > 1:621825/1‑140 (MQ=255) gcgAAACAATGGACGATGTGCAGGCGTTTTTTGACGGCATGGGTACGCAGTTTGCCAACGTGGTAACGCTGGTGGTCGCGGGTGAAATATTTGCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATCAggggg > 2:494242/1‑140 (MQ=255) gCAGGCGTTTTTTGACGGCATGGGTACGCAGTTTGCCAACGTGGTAACGCTGGTGGTCGCGGGTGAAATATTTGCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATCA‑GGGGGCGGAGCATTCTGGTCTggg < 1:494242/140‑1 (MQ=255) gCAGGCGTTTTTTGACGGCATGGGTACGCAGTTTGCCAACGTGGTAACGCTGGTGGTCGCGGGTGAAATATTTGCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATCA‑GGGGGCGGAGCATTCTGGTCTggg < 2:153431/140‑1 (MQ=255) cGTTTTTTGACGGCATGGGTACGCAGTTTGCCAACGTGGTAACGCTGGTGGTCGCGGGTGAAATATTTGCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATC‑GGGGGGCCGAGCATTCTGGTCTGGGCGGTa > 1:355980/1‑140 (MQ=255) ttGACGGCATGGGTACGCAGTTTGCCAACGTGGTAACGCTGGTGGTCGCGGGTGAAATATTTGCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATCA‑GGGGGCGGAGCATTCTGGTCTGGGCGGTATTGGCg < 2:566379/140‑1 (MQ=255) tGACGGCATGGGTACGCAGTTTGCCAACGTGGTAACGCTGGTGGTCGCGGGTGAAATATTTGCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATCA‑GGGGGCGGAGCATTCTGGTCTGGGCGGTATTGGCGt < 2:298540/140‑1 (MQ=255) gTACGCAGTTTGCCAACGTGGTAACGCTGGTGGTCGCGGGTGAAATATTTGCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATCA‑GGGGGCGGAGCATTCTGGTCTGGGCGGTATTGGCGTGATGAttatta < 1:65156/140‑1 (MQ=255) aCGTGGTAACGCTGGTGGTCGCGGGTGAAATATTTGCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATCA‑GGGGGCGGAGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTg < 2:525099/140‑1 (MQ=255) cGTGGTAACGCTGGTGGTCGCGGGTGAAATATTTGCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATCA‑GGGGGCGGAGCATTCTGGTCTGGGCAGTATTGGGGTGGTGGTTATTATGGCGCTGGTCATTGc > 1:230319/1‑140 (MQ=255) gTAACGCTGGTGGTCGCGGGTGAAATATTTGCGAAAGGCTTAACGACGATTGACACTGTCGATGCGGTTATCA‑GGGGGCGGAGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTAGTATGGCACTGGTCATTGCCAtt > 1:326865/1‑140 (MQ=255) gtggtCGCGGATGAAATATTTGCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATCA‑GGGGGCGGAGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCAtt > 1:559086/1‑140 (MQ=255) tggtCGCGGGTGAAATATTTGCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATCA‑GGGGGCGGAGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATtg > 2:679046/1‑140 (MQ=255) gcgGGTGAAATATTTGCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATCA‑GGGGGCGGAGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATg > 1:146972/1‑140 (MQ=255) gCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATCA‑GGGGGCGGAGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGGGCTCTGGCAATgcg < 2:146972/140‑1 (MQ=255) gCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATCA‑GGGGGCGGAGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGGGCTCTGGCAATgcg > 2:536299/1‑140 (MQ=255) gCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATCA‑GGGGGCGGAGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGGGCTCTGGCAATgcg < 2:621825/140‑1 (MQ=255) aTTGGCACTGTCGATGCGGTTATCA‑GGGGGCGGAGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGGTGGACTCTGGCACTGCGCCGTTTATGTCATTTGcc > 2:319004/1‑140 (MQ=255) aTTGGCACTGTCGATGCGGTTATCA‑GGGGGCGGAGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGGGCTCTGGCAATGCGCCGTTTATGTCATTTGcc > 1:48500/1‑140 (MQ=255) tCGATGCGGTTATCA‑GGGGGCGGAGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGGGCTCAGGCAATGAGCCGTTGATGTCAGTTGCCAGTCTTATTc > 1:199600/1‑140 (MQ=255) gTTATCA‑GGGGGCGGAGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGGGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTCCGAATATc > 2:9187/1‑140 (MQ=255) | CGCGAAACAATGGACGATGTGCAGGCGTTTTTTGACGGCATGGGTACGCAGTTTGCCAACGTGGTAACGCTGGTGGTCGCGGGTGAAATATTTGCGAAAGGCTTAACGACGATTGGCACTGTCGATGCGGTTATCAGGGGGGCGGAGCATTCTGGTCTGGGCGGTATTGGCGTGATGATTATTATGGCGCTGGTCATTGCCATTTGTGCCATTGTGATGGGCTCTGGCAATGCGCCGTTTATGTCATTTGCCAGTCTTATTCCGAATATC > NC_000913/3375754‑3376023 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |