| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,001,304 | (G)7→8 | coding (960/2259 nt) | xdhA → | putative xanthine dehydrogenase molybdenum‑binding subunit XdhA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,001,297 | 1 | . | G | 97.2% | 121.1 / ‑3.4 | 36 | coding (953/2259 nt) | xdhA | putative xanthine dehydrogenase molybdenum‑binding subunit XdhA |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (17/18); total (17/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCAACCCGTACCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑GG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGTTGAGT > NC_000913/3001160‑3001431 | cGCAACCCGTACCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑gg > 2:19596/1‑140 (MQ=255) cAACCCGTACCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑gg‑gg > 2:560075/1‑140 (MQ=255) cAACCCGTACCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCCAACACCGGCGCTTATGGATCTCACGGGCACCCCATCGCTTCTGC‑gg‑gg > 2:322477/1‑140 (MQ=255) accccGTCCCCGCCACGCTTTTTCCGTTGTCGGGCAATTGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑gg‑gg‑g < 1:324014/138‑1 (MQ=255) aCCCGTACCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑gg‑gg‑g > 2:370434/1‑139 (MQ=255) aCCCGTACCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑gg‑gg‑g < 1:370434/139‑1 (MQ=255) ccccGCCACGCTTTTACCATTGACGTGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑gg‑gg‑ggggaata < 1:300957/139‑6 (MQ=255) gCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCGTATGCATCGCACAGGCACTCCATCGGTTCTACGGG‑GG‑GGGAATAAAGt > 2:300957/1‑140 (MQ=255) cACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCg > 1:695380/1‑140 (MQ=255) cACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCg > 1:528146/1‑140 (MQ=255) cACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCg > 2:728727/1‑140 (MQ=255) gACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTc > 1:256049/1‑140 (MQ=255) cGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGt > 1:54202/1‑140 (MQ=255) gCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTtgt > 2:177786/1‑140 (MQ=255) aaTGGGCGTGAACCGCGACGGAGCATTGAAATGTTTTAGCCTGGATGTACTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGcc < 2:286554/140‑1 (MQ=255) tGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTa < 2:105356/140‑1 (MQ=255) tGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCCTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTa < 1:585312/140‑1 (MQ=255) aaCCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTGTAGCCTCGTAGTGCCTACGCTTACa > 1:347557/1‑140 (MQ=255) cgACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCa < 2:256049/140‑1 (MQ=255) gACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCaa > 1:679923/1‑140 (MQ=255) aCGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCaaa < 1:36522/140‑1 (MQ=255) cGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAg < 1:177786/140‑1 (MQ=255) ggAACATTGAAAGGTGATAGTCTGGGTGTCCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGa < 1:328606/140‑1 (MQ=255) cATTGAAAGGTTATAGTCTGGATGTACTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTg < 1:307264/140‑1 (MQ=255) ggTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAg < 1:484786/127‑1 (MQ=255) ggTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAg > 2:484786/1‑127 (MQ=255) ttATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACTCTTTCAGTTCAAAGACCTGCTATACCAAc > 1:209791/1‑140 (MQ=255) ttATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAAc < 2:54202/140‑1 (MQ=255) tAACACCGGCGCTTATGCATCTCACGGGCGCTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATg < 1:654287/140‑1 (MQ=255) gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTg > 2:428272/1‑127 (MQ=255) gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTg < 1:428272/127‑1 (MQ=255) gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATg < 2:54727/132‑1 (MQ=255) gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATg > 1:54727/1‑132 (MQ=255) gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTa < 1:728727/140‑1 (MQ=255) gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTACTAGACCGACCTCCCCACGGCAGGTGCGATGCGTGGTTa > 2:285249/1‑140 (MQ=255) tATGCATCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGgcg < 2:528146/140‑1 (MQ=255) aTCTCACGGGCACTCGATCGCTCCTTC‑GGCGG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCca < 1:285249/140‑1 (MQ=255) aTCTCACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCca < 2:695380/140‑1 (MQ=255) tctcACGGGCACTCCAGGGCTTCTGC‑GG‑GGCTGTATTAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCcac < 2:347557/140‑1 (MQ=255) ctcACGGGCACTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCcaca > 1:373978/1‑140 (MQ=255) ccTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTAtt < 2:675305/139‑1 (MQ=255) cTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTAttt > 2:692987/1‑140 (MQ=255) cTCCATCGCTTCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTAttt > 1:689644/1‑140 (MQ=255) tCTGCGGG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGTTGAGt < 2:497774/140‑1 (MQ=255) | CGCAACCCGTACCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑GG‑GG‑GGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGTTGAGT > NC_000913/3001160‑3001431 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |