| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,270,488 | (C)7→8 | noncoding (105/377 nt) | rnpB ← | RNase P catalytic RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,270,481 | 1 | . | C | 75.0% | 13.7 / 1.2 | 8 | noncoding (112/377 nt) | rnpB | RNase P catalytic RNA component |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base C (4/2); total (4/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTG‑CACTGGT‑C‑GT‑GGG‑TTT‑CCCCC‑CCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTG > NC_000913/3270390‑3270614 | cgGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTTTTG‑CACTGGTCC‑GG‑GGG‑TTT‑CCCCC‑CCCCGCGGTACCCGGCACCCCGCCCCATGGCGCCCGGCCttt > 2:635813/1‑140 (MQ=255) cACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTG‑CACTGGT‑C‑GT‑GGG‑TTTCCCCCC‑CCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGt < 2:565102/140‑1 (MQ=255) cccTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTTCTCTCTTTTT‑CCCCTGT‑CGGG‑GGG‑TTT‑CCCCC‑CCCCGCGGTACGTTGCACCCTCCCTCATGGGGCCCGGTCCTTTCTCcccccccccccgcc > 2:331178/1‑136 (MQ=255) cccTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGGTTTCTCTCTCTTGTTCCCGGC‑C‑GG‑GGG‑TTT‑CCCCC‑CCCCGCGTGGCCTCGGGCCCTGCCCTTCGGAGGCCCGACCTTcccccccccccccccccc > 2:595210/1‑136 (MQ=255) ttACCTGATCCCGCTTGCGCGGACCATCGGCGGTTTTCTCTCTGTTG‑CACTGGT‑C‑GT‑GGG‑TTTCCCCCC‑CCCGGCGTTACCTGGCCCCCCCCCCCCTGGAGCCCCGGCTTTCCCCCCCCCCCCCCCCCCCCCCCCCagag > 2:83484/1‑140 (MQ=255) tCCCGCTTGCGCGGGCCATCGGCGGTTTTCTCTCTGTTG‑CACTGGT‑C‑GTGGGG‑TTC‑CCCCC‑CCCGGCGTTACCTGGCACCCTGCCCCATGGAGCCCGGGCTTTTCTCCCCTCCCCCCCTCTCCCCCCCAGAGgacgacga > 2:88081/1‑140 (MQ=255) gCTTGCGCGGGCCATCGGCGGTTTTCTCTCTGTTG‑CACTGGT‑T‑GTGGGG‑TTT‑CCCCC‑CCCCGCGGTTCCTGGCACCCCGCCCCCTTGAGCCCGGACTTTCCTCCCCCCCCCCCCCCCCCCCCCCAGAGGACGACGACGaa > 2:654918/1‑140 (MQ=255) tctctGTTG‑CACTGGC‑C‑GT‑GGGATTC‑CCCCC‑CCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGgc < 1:255514/140‑1 (MQ=255) ctctGTTG‑CACTGGT‑C‑GT‑GGG‑TTT‑CCCCCTCCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGAGACTGTCTGGTCAGCTTCGgcg < 1:331178/140‑1 (MQ=255) tGTTG‑CACTGGT‑C‑GT‑GGG‑TTTCCCCCC‑CCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGgcgcgc < 1:654918/140‑1 (MQ=255) gTTG‑CACTGGT‑C‑GT‑GGG‑TTTCCCCCC‑CCAGGCGTTACCTTGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTGCGGCGCGCa > 2:425430/1‑140 (MQ=255) gTTG‑CACTGGT‑C‑GT‑GGG‑TTTCCCCCC‑CCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCAAAGAGGACGACGGCGAGGCGGCGACGGTCTTGTCAGCTTCGGCGCGCa > 2:203984/1‑140 (MQ=255) cTGGT‑C‑GT‑AGG‑TTTCCCCCC‑CCAGGCGTTAACTGGGACCTTGCCCTATCGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATag < 2:343585/140‑1 (MQ=255) ggg‑TTTCCCCCC‑CCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTg > 1:79804/1‑140 (MQ=255) | CGGTGCGCTCTTACCGCACCCTTTCACCCTTACCTGATCCCGCTTGCGCGGGCCATCGGCGGTTTGCTCTCTGTTG‑CACTGGT‑C‑GT‑GGG‑TTT‑CCCCC‑CCAGGCGTTACCTGGCACCCTGCCCTATGGAGCCCGGACTTTCCTCCCCTCCGCCCGTCTCCCCCGAAGAGGACGACGACGAAGCGGCGACTGTCTGGTCAGCTTCGGCGCGCAGTATAGAGGGTTTG > NC_000913/3270390‑3270614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |