| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 434,513 | A→G | I353M (ATA→ATG) | ribD → | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 434,513 | 0 | A | G | 95.5% | 70.7 / ‑6.2 | 22 | I353M (ATA→ATG) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (11/10); minor base T (1/0); total (12/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAGGCGGGTTTAGTCGATGAGCTGATTGTCTATATCGCACCTAAACTATTAGGCAGCGACGCCCGCGGATTATGCACGCTGCCAGGGCTTGAGAAATTAGCCGACGCCCCCCAATTTAAATTCAAAGAGATACGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGTGGGTGCATGATCTCCCGGCTCGAAAGGGAAGCAGCGCACGAAATATTATGCTAAAATCCGCCCCCCTGCGGGGCCATACTCGAACCCGAAGGAAG > NC_000913/434382‑434643 | cAGGCGGGTTTAGTCGTTGAGCTGATTGTCTTTATCGCACCTAAACTAATAGGCAGCGACGCCCGCGGATTATGCACGCTGCCAGGGCTTGAGAAATTAGCCGACGCCCCCCAATTTAAATTCAAAGAGATGCGTCATGt < 2:313317/140‑1 (MQ=255) tGAGCTGATTGTCTATATCGCACCTAAACTATTAGGCAGCGACGCCCGCGGATTATGCACGCTGCCAGGGCTTGAGAAATTAGCCGACGCCCCCCAATTTAAATTCAAAGAGATTCGTCATGTAGGCCCGGATGTTTGcc > 1:298392/1‑140 (MQ=255) gTCTATATCGCACCTCAACTATCAGTCAGTGACGCCCGCGGATTATGCACGCTGCCAGGGCTTGAGAAATTAGCCGACGCCCCCCAATTTAAATTCAAAGAGATGCGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGt < 1:343734/140‑1 (MQ=255) gTCTATATCGCACCTAAACTATTAGGCAGCGACGCCCGCGGATTATGCACGCTGCCAGGGCTTGAGAAATTAGCCGACGCCCCCCAATTTAAATTCAAAGAGATGCGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGt < 1:371957/140‑1 (MQ=255) gTCTATATCGCACCTAAACTATTAGGCAGCGACGCCCGCGGATTATGCACGCTGCCAGGGCTTGAGAAATTAGCCGACGCCCCCCAATTTAAATTCAAAGAGATGCGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGt < 2:385290/140‑1 (MQ=255) cTATATCGCACCTAAACTATTAGGCAGCGACGCCCGCGGATTATGCACGCTGCCAGGGCTTGAGAAATTAGCCGACGCCCCCCAATTTAAATTCAAAGAGATGCGTCATGTAGTCCCGGATGTTTGCCTGCATTTAGTgg > 1:618134/1‑140 (MQ=255) atatCGCACCTAAACTATTAGGCAGCGACGCCCGCGGATTATGCACGCTGCCAGGGCTTGAGAAATTAGCCGACGCCCCCCAATTTAAATTCAAAGAGATGCGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGTGGGt > 1:389843/1‑140 (MQ=255) aCCTAAACTATTAGGCAGCGACGCCCGCGGATTATGCACGCTGCCAGGGCTTGAGAAATTAGCCGACGCCCCCCAATTTAAATTCAAAGAGATGCGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGTGGGTGCATGAt > 1:440044/1‑140 (MQ=255) aCCTAAACTATTAGGCAGCGACGCCCGCGGATTATGCACGCTGCCAGGGCTTGAGAAATTAGCCGACGCCCCCCAATTTAAATTCAAAGAGATGCGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGTGGGTGCATGAt > 1:489345/1‑140 (MQ=255) aaaCTATTAGGCAGCGACGCCCGCGGATTATGCACGCTGCCAGGGCTTGAGAAATTAGCCGACGCCCCCCAATTTAAATTCAAAGAGATGCATCATGTAGGCCCGGATGTTTGCCTGAATTTAGTGGGTGCATGATCTcc > 2:276111/1‑140 (MQ=255) aCGCCCGCGGATTATGCACGCTGCCAGGGCTTGAGAAATTAGCCGACGCCCCCCAATTTAAATTCAAAGAGATGCGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGTGGGTGCATGATCTCCCGGCTCGAAAGGGAag > 2:132738/1‑140 (MQ=255) ccGCGGATTATGCACGCTGCCAGGGCTTGAGAAATTAGCCGACGCCCCCCAATTTAAATTCAAAGAGATGCGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGTGGGTGCATGATCTCCCGGCTCGAAAGGGAagcagc < 2:702244/140‑1 (MQ=255) ccGCGGATTATGCACGCTGCCAGGGCTTGAGAAATTAGCCGACGCCCCCCAATTTAAATTCAAAGAGATGCGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGTGGGTGCATGATCTCCCGGCTCGAAAGGGAagcagc < 2:389843/140‑1 (MQ=255) gATTATGCACGCTGCCAGGGCTTGAGAAATTAGCCGACGCCCCCCAATTTAAATTCAAAGAGATGCGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGTGGGTGCATGATCTCCCGGCTCGAAAGGGAAGCAGCGCACg < 2:440044/140‑1 (MQ=255) tGAGAAATTAGCCGACGCCCCCCAATTTAAATTCAAAGAGATGCGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGTGGGTGCATGATCTCCCGGCTCGAAAGGGAAGCAGCGCACGAAATATTATGCTAAAATCCGcc > 2:630221/1‑140 (MQ=255) ttAGCCGACGCCCCCCAATTTAAATTCAAAGAGATGCGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGTGGGTGCATGATCTCCCGGCTCGAAAGGGAAGCAGCGCACGAAATATTATGCTAAAATCCGCCCCCCTGc < 2:489345/140‑1 (MQ=255) tttAAATTCAAAGAGATGCGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGTGGGTGCATGATCTCCCGGCTCGAAAGGGAAGCAGCGCACGAAATATTATGCTAAAATCCGCCCCCCTGCGGGGCCATACTCGAAccc > 1:49763/1‑140 (MQ=255) aaaTTCAAAGAGATGCGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGTGGGTGCATGATCTCCCGGCTCGAAAGGGAAGCAGCGCACGAAATATTATGCTAAAATCCGCCCCCCTGCGGGGCCATACTCGAACCCgaa > 1:372972/1‑140 (MQ=255) aTTCAAAGAGATGCGTCGTGTATGCCCGGATGTTTCCCTGCATTTAGTGGGTGCATGATCTCCCGGCTCGAAAGGGAAGCAGCGCACGAAATATTATGCTAAAATCCGCCCCCCTGCGGGGCCATACTCGAACCCgaagg < 2:298392/140‑1 (MQ=255) cAAAGAGATGCGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGTGGGTGCATGATCTCCCGGCTCGAAAGGGAAGCAGCGCACGAAATATCATGCTAAAATCCCCCCCCCTGCGGGACCATACTCGAACCCgaaggaag > 2:243890/1‑140 (MQ=255) aaGAGATGCGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGTGGGTGCATGATCTCCCGGCTCGAAAGGGAAGCAGCGCACGAAATATTATGCTAAAATCCGCCCCCCTGCGGGGCCATACt > 1:507447/1‑123 (MQ=255) aaGAGATGCGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGTGGGTGCATGATCTCCCGGCTCGAAAGGGAAGCAGCGCACGAAATATTATGCTAAAATCCGCCCCCCTGCGGGGCCATACt < 2:507447/123‑1 (MQ=255) | CAGGCGGGTTTAGTCGATGAGCTGATTGTCTATATCGCACCTAAACTATTAGGCAGCGACGCCCGCGGATTATGCACGCTGCCAGGGCTTGAGAAATTAGCCGACGCCCCCCAATTTAAATTCAAAGAGATACGTCATGTAGGCCCGGATGTTTGCCTGCATTTAGTGGGTGCATGATCTCCCGGCTCGAAAGGGAAGCAGCGCACGAAATATTATGCTAAAATCCGCCCCCCTGCGGGGCCATACTCGAACCCGAAGGAAG > NC_000913/434382‑434643 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |