| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,023,436 | G→A | R234H (CGC→CAC) | tatC → | twin arginine protein translocation system ‑ TatC protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,023,436 | 0 | G | A | 96.0% | 74.3 / NA | 25 | R234H (CGC→CAC) | tatC | twin arginine protein translocation system ‑ TatC protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (9/15); minor base T (1/0); total (10/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGTTGGTGCATTCGTTGTCGGGATGTTGCTGACGCCGCCGGATGTCTTCTCGCAAACGCTGTTGGCGATCCCGATGTACTGTCTGTTTGAAATCGGTGTCTTCTTCTCACGCTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCGGTTGTCATATGGAGTACAGGATG > NC_000913/4023326‑4023556 | ggttggtGCATTCGTTGTCGGGATGTTGCTGACGCCGCCGGATGTCTTCTCGCAAACGCTGTTGGCGATCCCGATGTACTGTCTGTTTGAAATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCggg < 2:444309/140‑1 (MQ=255) gttggtGCATTCGTTGTCGGGATGTTGCTGACGCCGCCGGATGTCTTCTCGCAAACGCTGTTGGCGATCCCGATGTACTGTCTGTTTGAAAACGGTGTCTACTTCTGACTCTTTTACGTTGGACAAGGGCGCAATCGGGa > 2:359263/1‑140 (MQ=255) tggtGCATTCGTTGTCGGGATGTTGCTGACGCCGCCGGATGTCTTCTCGCAAACGCTGTTGGCGATCCCGATGTACTGTCTGTTTGACATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAag < 2:430278/140‑1 (MQ=255) agCATTCGGTGTCGGGATGTTGCTGACGCCGCCGGATGTCTTGTCGCAAACGCTGTTGGCGGTCCCGATGCACTGTCTGTTTGAAATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAgggg > 2:578411/2‑140 (MQ=255) gTTGTCGGGATGTTGCTGACGCCGCAGGATGTCTTCTAGCAAACGCTGTTGGCGATCCCGATGTACTGTCTGTTTGAAATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAacga < 1:327761/140‑1 (MQ=255) tGTCGGGATGTTGCTGACGCCGCCGGATGTCTTCTCGCAAACGCTGTTGGCGATCCCGATGTACTGTCTGTTTGAAATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAacgacg < 1:65271/140‑1 (MQ=255) ggATGTCTTCTCGCAGACGCTGGTGCCGATCCCGATGCACTGTCTGTTTGAAATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTg < 1:359263/140‑1 (MQ=255) cGCTGTTGGCGATCCCGATGTACTGTCTGTTTGAAATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCg > 2:306974/1‑140 (MQ=255) cccGATGTACTGTCTGTTTGAAATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCgg < 1:306974/140‑1 (MQ=255) cccGATGTACTGTCTGTTTGAAATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCgg < 1:65623/140‑1 (MQ=255) cccGATGTACTGTCTCTTTGAACTCCGTGACTTCTTCCCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCgg < 1:237061/140‑1 (MQ=255) agacagctgtctgtTAGAAATCCGTATCTCCTTCTCATACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCGGTTg < 1:240347/134‑1 (MQ=255) tGTACTGTCTGTTTGAAATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGc < 2:108513/133‑1 (MQ=255) tGTACTGTCTGTTTGAAATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGc > 1:108513/1‑133 (MQ=255) aCTGTCTGTTTGAAATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCGGTTGTCata < 1:733650/140‑1 (MQ=255) tgtctgtTTGAAATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCGGTTGTCATATg < 2:28238/140‑1 (MQ=255) tctgtTTGAAATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCGGTTGTCATATGGa > 2:385399/1‑140 (MQ=255) ttGAAATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCGGTTGTc < 1:590622/128‑1 (MQ=255) ttGAAATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCGGTTGTc > 2:590622/1‑128 (MQ=255) ttGAAATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCGGTTGTCata > 1:696317/1‑131 (MQ=255) ttGAAATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCGGTTGTCata < 2:696317/131‑1 (MQ=255) ttGAAATCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCGGTTGTCATATGGAGTACa > 2:502921/1‑140 (MQ=255) aaaTCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAAGCGCGCGTCAGGGGGGTTGTCATATGGAGtctgtct > 2:240347/1‑134 (MQ=255) aTCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCGGTTGTCata < 1:77339/126‑1 (MQ=255) aTCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCGGTTGTCata > 2:77339/1‑126 (MQ=255) aTCGGTGTCTTCTTCTCACACTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCGGTTGTCATATGGAGTACAGGATg > 1:366520/1‑140 (MQ=255) | GGTTGGTGCATTCGTTGTCGGGATGTTGCTGACGCCGCCGGATGTCTTCTCGCAAACGCTGTTGGCGATCCCGATGTACTGTCTGTTTGAAATCGGTGTCTTCTTCTCACGCTTTTACGTTGGTAAAGGGCGAAATCGGGAAGAGGAAAACGACGCTGAAGCAGAAAGCGAAAAAACTGAAGAATAAATTCAACCGCCCGTCAGGGCGGTTGTCATATGGAGTACAGGATG > NC_000913/4023326‑4023556 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |