| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 805,840 | G→A | intergenic (+76/+158) | ybhJ → / ← ybhC | putative hydratase YbhJ/outer membrane lipoprotein YhbC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 805,840 | 0 | G | A | 94.4% | 35.7 / NA | 18 | intergenic (+76/+158) | ybhJ/ybhC | putative hydratase YbhJ/outer membrane lipoprotein YhbC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (10/7); minor base T (1/0); total (11/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCGAGATTATCAAGGCGGGTAGTTTGATTAACTTCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATT > NC_000913/805708‑805896 | cgcgAGATTATCAAGGCGGGTAGTTTGATTAACTTCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCa > 1:143820/1‑140 (MQ=255) cgAGATTATCAAGGCGGGTAGTTTGATTAACTTCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATc < 2:472934/140‑1 (MQ=255) gCGGGTAGTTTGATTAACTTCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGccg > 1:483037/1‑139 (MQ=255) cGGGTAGTTTTGTTAACTTCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGGTGCGAAGCTTGCGCGTATAATCAGACCTACAGATCGGATCGAA‑CCGTAGGccgg > 2:215435/1‑138 (MQ=255) ggTAGTTTGATTAACTTCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGAt > 2:433845/1‑140 (MQ=21) ggTAGTTTGATTAACTTCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGAt > 1:79820/1‑140 (MQ=21) ggTAGTTTGATTAACCTCAATAAAACCCGACAGATGTCAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGAt < 1:211040/140‑1 (MQ=18) aGTTTGATTAACTTCAAGAAAAACCGTCAGACGTACAAACCGCCATGTCAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGCCCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAg < 2:223948/140‑1 (MQ=18) aaCTTCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACC‑GTAGGCCGGATAAGGCGTTTACg < 2:646949/140‑1 (MQ=17) aaCTTCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAGGCGtttacg < 1:139220/140‑4 (MQ=18) cTTCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATGCGACCTACTAATAGCAGCGAA‑CCGTAGGCCAGATAAGGCGTTTACgcc > 2:206854/1‑139 (MQ=18) ttCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAGGCGTTTACgccg > 2:39097/1‑138 (MQ=17) ttCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAGGCGTTTACgccg > 2:584388/1‑138 (MQ=17) aaaCCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc < 2:160152/140‑1 (MQ=14) aaaCCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc < 2:57547/140‑1 (MQ=14) aaCCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa > 2:164403/1‑140 (MQ=14) aCCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa > 2:445114/1‑139 (MQ=14) aCCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa > 1:412193/1‑139 (MQ=14) cAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaaatagt > 1:429904/1‑134 (MQ=11) | CGCGAGATTATCAAGGCGGGTAGTTTGATTAACTTCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATT > NC_000913/805708‑805896 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |