| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 805,863 | A→G | intergenic (+99/+135) | ybhJ → / ← ybhC | putative hydratase YbhJ/outer membrane lipoprotein YhbC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 805,863 | 0 | A | G | 93.3% | 24.5 / NA | 15 | intergenic (+99/+135) | ybhJ/ybhC | putative hydratase YbhJ/outer membrane lipoprotein YhbC |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (8/6); total (9/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGTAGTTTGATTAACTTCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATT > NC_000913/805726‑805896 | ggTAGTTTGATTAACTTCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGAt > 1:79820/1‑140 (MQ=21)ggTAGTTTGATTAACTTCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGAt > 2:433845/1‑140 (MQ=21)ggTAGTTTGATTAACCTCAATAAAACCCGACAGATGTCAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGAt < 1:211040/140‑1 (MQ=18) aGTTTGATTAACTTCAAGAAAAACCGTCAGACGTACAAACCGCCATGTCAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGCCCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAg < 2:223948/140‑1 (MQ=18) aaCTTCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAACC‑GTAGGCCGGATAAGGCGTTTACg < 2:646949/140‑1 (MQ=17) aaCTTCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAGGCGtttacg < 1:139220/140‑4 (MQ=18) cTTCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATGCGACCTACTAATAGCAGCGAA‑CCGTAGGCCAGATAAGGCGTTTACgcc > 2:206854/1‑139 (MQ=18) ttCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAGGCGTTTACgccg > 2:39097/1‑138 (MQ=17) ttCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAGGCGTTTACgccg > 2:584388/1‑138 (MQ=17) aaaCCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc < 2:160152/140‑1 (MQ=14) aaaCCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc < 2:57547/140‑1 (MQ=14) aaCCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa > 2:164403/1‑140 (MQ=14) aCCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa > 1:412193/1‑139 (MQ=14) aCCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa > 2:445114/1‑139 (MQ=14) cAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAAATCGCATCGAA‑CCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaaatagt > 1:429904/1‑134 (MQ=11) | GGTAGTTTGATTAACTTCAATAAAAACCGTCAGATGTAAAAAGCGCCATGTGAATGTAGGTCGCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATT > NC_000913/805726‑805896 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |