| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,109,187 | A→G | intergenic (‑32/‑366) | speC ← / → yqgA | ornithine decarboxylase, biosynthetic/DUF554 domain‑containing protein YqgA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,109,187 | 0 | A | G | 97.3% | 125.6 / NA | 37 | intergenic (‑32/‑366) | speC/yqgA | ornithine decarboxylase, biosynthetic/DUF554 domain‑containing protein YqgA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (20/16); minor base C (0/1); total (20/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.59e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATACCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCAGACATCAGTAAAAGCAGAAACGCTCTGATTTTACTGTTGTCCTGCAGTGAGCGTGCGT > NC_000913/3109060‑3109311 | gTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGCAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGa < 2:470475/133‑1 (MQ=255) ccGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACa < 2:113171/133‑1 (MQ=255) gTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAg < 1:47133/133‑1 (MQ=255) tAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAgg > 2:475336/1‑133 (MQ=255) aTCAGTACCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGa < 2:595132/133‑1 (MQ=255) tcCCAACGCCCCCACCCGACGATGCGAATAAATTCGGGATATCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGc < 2:182827/133‑1 (MQ=255) aaCGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGGCAAGGGGGAAAACGCTGCCCCa > 1:241529/1‑133 (MQ=255) aaCGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCa > 1:544762/1‑133 (MQ=255) cGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGCATGCCGGCCAAGATGGAAAACCCTGCCCCATg > 2:255986/1‑133 (MQ=255) cGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATg < 2:24004/133‑1 (MQ=255) cGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATg > 1:632921/1‑133 (MQ=255) agcacGCGACTATGAGAAGAAAGGTGGGCTACTAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGat < 2:315380/131‑1 (MQ=255) ccacGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGata > 2:543029/1‑133 (MQ=255) cgcgACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACTCTGCCCCATCAGATATgg > 1:264530/1‑133 (MQ=255) gagaAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTg < 1:571429/133‑1 (MQ=255) tACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGAcc > 2:577586/1‑133 (MQ=255) cAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGcc > 2:609179/1‑133 (MQ=255) aGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCa < 2:544762/133‑1 (MQ=255) tactGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCAGACATCa > 2:592918/1‑133 (MQ=255) gcggcAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCGTGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCAGACATCAGTaaa > 2:143013/1‑133 (MQ=255) gcggcAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCAGACATCAGTaaa > 1:90957/1‑133 (MQ=255) gcggcAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAACTCCGACCACCAGACATCAGTaaa > 2:233086/1‑133 (MQ=255) ggcAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCAGACATCAGTAAAAg > 1:16043/1‑133 (MQ=255) aaTATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCAACAGATACTGCCGCCAGTCATCCGTAAAAGCAg > 2:305808/1‑133 (MQ=255) aTTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCGGACGGCCGGACATCAGTAAAAGCAGAAACGct > 2:194857/1‑133 (MQ=255) tGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCAGACATCAGTAAAAGCAGAAACGctct < 1:592918/133‑1 (MQ=255) tAAGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCAGACATCAGTAAAAGCAGAAACGCTCTGATTTTAc > 2:550914/1‑133 (MQ=255) aGCGCAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCAGACATCAGTAAAAGCAGAAACGCTCTGATTTTACtg < 2:16043/133‑1 (MQ=255) cgcAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCAGACATCAGTAAAAGCAGAAACGCTCTGAATTTACtgtt > 1:76343/1‑133 (MQ=255) cAAACCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCAGACATCAGTAAAAGCAGAAACGCTCTGATTTTACtgttgt > 2:351300/1‑133 (MQ=255) aaaCCCGTTTCGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCAGACATCAGTAAAAGCAGAAACGCTCTGATTTTACTGTTGTc < 1:577586/133‑1 (MQ=255) aaCCCGTTTCGGGGACGTAAGAATCCCGGACACGGTGGAAAGCCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCAGACATCAGTAAAAGCAGAAACGCTCTGATTTTACTGTTGTcc < 2:195945/133‑1 (MQ=255) cGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCAGACATCAGTAAAAGCAGAAACGCTCTGATTTTACTGTTGTCCTGCAGTGAg < 2:105207/133‑1 (MQ=255) cGGGGAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCAGACATCAGTAAAAGCAGAAACGCTCTGATTTTACTGTTGTCCTGCAGTGAg < 1:475336/133‑1 (MQ=255) ggggAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCAGACATCAGTAAAAGCAGAAACGCTCTGATTTTACTGTTGTCCTGCAGTGAgc < 2:90957/133‑1 (MQ=255) ggggAAGTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCAGACATCAGTAAAAGCAGAAACGCTCTGATTTTACTGTTGTCCTGCAGTGAgc < 1:609179/133‑1 (MQ=255) gTAAGAATGCCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCAGACATCAGTAAAAGCAGAAACGCTCTGATTTTACTTTTGTCCAGCAGTGAgcgtgcgt > 1:231590/1‑133 (MQ=255) | GTCCGTAAAATCAGTATCTCCCAACGCCACCACGCGACGATGAGAAGAAAGTCGGGATACCAGTTCACTACTGGCGGCAATATTCATTGATTTCATAAGCGCAAACCCGTTTCGGGGAAGTAAGAATACCGGACAAGGTGGAAAACCCTGCCCCATGAGATATGGGTCAAACTGGTCACCAGCTCCGACCGCCAGACATCAGTAAAAGCAGAAACGCTCTGATTTTACTGTTGTCCTGCAGTGAGCGTGCGT > NC_000913/3109060‑3109311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |