| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,609,036 | C→T | intergenic (‑14/+193) | yneE ← / ← uxaB | conserved inner membrane protein YneE/tagaturonate reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,609,036 | 0 | C | T | 97.4% | 122.4 / NA | 38 | intergenic (‑14/+193) | yneE/uxaB | conserved inner membrane protein YneE/tagaturonate reductase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (14/23); minor base A (0/1); total (14/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACAGCGATAGAAAAGAGAAAATTGAGTAGTAAGCGCGAGGATATCTTGGATAATACTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGCGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAATTACCTACAAGCTTACAACATTAGCAGGCGCTGCATGTGGCACCTGTTAATGATAAAGGCATATAGG > NC_000913/1608910‑1609163 | aCAGCGATAGAAAAGAGAAAATTGAGTAGTAAGCGCGAGGATATCTTGGATAATACTGAGCCGTGCCAGAC‑AAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGaaa > 2:474665/1‑133 (MQ=255) aTAGAAAAGAGAAAATTGAGTAGTAAGCGCGAGGATATCTTGGATAATACTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCg > 2:386667/1‑133 (MQ=255) tAGAAAAGAGAAAATTGAGTAGTAAGCGCGAGGATATCTTGGATAATACTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTTTCTTCAAGTGTGGGAAAGTCGc > 1:242130/1‑133 (MQ=255) tAGAAAAGAGAAAATTGAGTAGTAAGCGCGAGGATATCTTGGATAATACTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGc > 1:541510/1‑133 (MQ=255) aGAAAAGAGAAAATTTAGTAGTAATCGCCAGGATATCTTGGCTAATACTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGcc < 2:265627/133‑1 (MQ=255) aGAAAAGAGAAAATTGAGTAGTAAGCGCGAGGATATCTTGGATAATACTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGcc < 1:386667/133‑1 (MQ=255) gAAAAGAGAAAATTGAGTAGTAAGCGCGAGGATATCTTGGATAATACTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGccc < 1:39988/133‑1 (MQ=255) gAAAAGAGAAAATTGAGTAGTAAGCGCGAGGATATCTTGGATAATACTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGccc < 1:35638/133‑1 (MQ=255) agagAAAATTGAGTAGTAAGCGCGAGGATATCTTGGATAATACTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTAtt < 1:557189/133‑1 (MQ=255) gtaAGCGCGAGGATATCTTGGATAATACTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGAt < 2:93017/133‑1 (MQ=255) taAGCGCGAGGATATCTTGGATAATACTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATc < 1:74020/133‑1 (MQ=255) cgcgAGGATATCTTGGATAATACTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACAt < 1:519402/133‑1 (MQ=255) gcgAGGATATCTTGGATAATACTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACAtt < 1:83956/133‑1 (MQ=255) gAGGATATCTTGGATAATACTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATtct < 2:610452/133‑1 (MQ=255) aGGATATCTTGGATAATACTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATtctc > 1:554167/1‑133 (MQ=255) tCTTGGATAATACTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACg < 2:541510/133‑1 (MQ=255) tCTTGGATAATACTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACg > 2:36178/1‑133 (MQ=255) tCTTGGATAACACTGGGCCGTGCCTGACAAAACTACGGCGCGGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACg < 2:242130/133‑1 (MQ=255) taCTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTACTAAACGTGATTAAGATTACATTCTCCAGACGCTACTTACaa > 2:238819/1‑133 (MQ=255) aCTGAGCCGTGCCAGAC‑AAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAAt < 1:474665/133‑1 (MQ=255) aGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAATTAc > 1:453332/1‑133 (MQ=255) aGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAATTAc > 1:347415/1‑133 (MQ=255) aGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAATTAc > 1:157788/1‑133 (MQ=255) gTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAATTACCTAc < 1:523537/133‑1 (MQ=255) tGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAATTACCTACa > 2:548847/1‑133 (MQ=255) tGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAATTACCTACa > 2:639236/1‑133 (MQ=255) tGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACAATCTCAAGACGCAACATACAAACTACCTACa > 1:216991/1‑133 (MQ=255) gACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAATTACCTACAAGCtt < 1:639236/133‑1 (MQ=255) gtgtTGTTGTGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAATTACCTACAAGCTTACAACATTAGCAGGCGCTGCa < 2:347415/133‑1 (MQ=255) gttgtGGACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAATTACCTACAAGCTTACAACATTAGCAGGCGCTGCATGTgg < 1:36178/133‑1 (MQ=255) gACGAACAATCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAATTACCTACAAGCTTACAACATTAGCAGGCGCTGCATGTGGCACCTg > 1:478247/1‑133 (MQ=255) ttaTGGTTATCTTCAGGTGTGGAAAACTTGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAATTACCTACAAGCTTACAACATTAGCAGGCGCTGCATGTGGCACCTGTTAATGATa < 2:293552/131‑1 (MQ=255) tCATGGTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAATTACCTACAAGCTTACAACATTAGCAGGCGCTGCATGTGGCACCTGTTAATGATa < 2:554167/133‑1 (MQ=255) aTGGTTATCTTCAGGAGTGGAAAATTCGGCCTTTTAAACGTAATTACGATCACATTCTCAAGACGCTACTTACAAATTACCTACAAGCTTACAACATTAGCAGGCGCTGCATGTGGCACCTGTTAATGATaaa < 2:216991/133‑1 (MQ=255) gTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAATTACCTACAAGCTTACAACATTAGCAGGCGCTGCATGTGGCACCTGTTAATGATAAAGGc < 2:478247/133‑1 (MQ=255) gTTATCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAATTACCTACAAGCTTACAACATTAGCAGGCGCTGCATGTGGCACCTGTTAATGATAAAGGc < 1:75294/133‑1 (MQ=255) aTCTTCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAATTACCTACAAGCTTACAACATTAGCAGGCGCTGCATGTGGCACCTGTTAATGATAAAGGCata < 1:548847/133‑1 (MQ=255) tCAGGTGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAATTACCTACAAGCTTACAACATTAGCAGGCGCTGCATGTGGCACCTGTTAATGATAAAGGCATATAgg < 2:157788/133‑1 (MQ=255) | ACAGCGATAGAAAAGAGAAAATTGAGTAGTAAGCGCGAGGATATCTTGGATAATACTGAGCCGTGCCAGACAAAAATACGGCGCAGCCAGTGTTGTTGTGGACGAACAATCATGGTTATCTTCAGGCGTGGAAAAGTCGCCCTATTAAACGTGATTACGATCACATTCTCAAGACGCTACTTACAAATTACCTACAAGCTTACAACATTAGCAGGCGCTGCATGTGGCACCTGTTAATGATAAAGGCATATAGG > NC_000913/1608910‑1609163 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |