| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,769,478 | (G)7→8 | coding (405/1113 nt) | ydiK → | putative transporter YdiK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,769,471 | 1 | . | G | 90.9% | 103.5 / 3.5 | 33 | coding (398/1113 nt) | ydiK | putative transporter YdiK |
| Reads supporting (aligned to +/- strand): ref base . (0/3); new base G (13/17); total (13/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCGTCGACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑T‑G‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTTCTCTTCAGTGCC > NC_000913/1769339‑1769598 | tcgtcgACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑T‑g‑g‑ggggg > 1:659834/1‑140 (MQ=255)tcgtcgACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCAGTATGCAGGCTAGCGCAACTTACTGGATA‑T‑g‑g‑ggggg > 1:339531/1‑140 (MQ=255) aCGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGc > 1:405978/1‑140 (MQ=255) ggCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAAGCTGGCAAAACGTGCTGGATACG‑G‑G‑GGGGGACGGCGa > 1:389187/1‑140 (MQ=255) gCAGCGGCCCGCTAATTAAAGCGATTTCCAGCGGTGACAGGACGTTACACGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGAt < 2:339531/140‑1 (MQ=255) aTTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTcc < 2:537081/140‑1 (MQ=255) ttAAAGCCATTTCCAGCGGTGATATGACGTTGCCCCATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCg < 2:334205/140‑1 (MQ=255) aaaGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGcc < 2:1549/140‑1 (MQ=255) cAGCGGTGACATGACGTTCCCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGc < 1:406652/140‑1 (MQ=255) ggTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGcacca < 2:405978/140‑1 (MQ=255) gCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAgg > 1:641834/1‑140 (MQ=255) gCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAgg > 2:22259/1‑140 (MQ=255) gCGTGGCTAAATACCATCCCGGGGATTGGCGCGTAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAgg < 2:389187/140‑1 (MQ=255) cGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGATAGTCCGCCCTTATAATCGCACCACCACCACTAGGTTCGTTGGGCAggc > 2:358490/1‑140 (MQ=255) ccATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCgg < 1:546857/140‑1 (MQ=255) aTTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACGACCACCTAGTTCGTGGGGCAGGCGGCGCATATCGGgc > 1:280283/1‑140 (MQ=255) ttCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGgcg > 1:716505/1‑140 (MQ=255) ccGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCt < 2:543124/140‑1 (MQ=255) ggTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCttt < 2:659834/140‑1 (MQ=255) ggTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCttt < 1:514660/140‑1 (MQ=255) gTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTa > 1:750510/1‑140 (MQ=255) gcgAAGCTTTATGCAGGCTGGCGCAACTTGCGGGAGA‑T‑GCG‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCAtt < 2:377814/140‑1 (MQ=255) cgAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATtg > 2:643558/1‑140 (MQ=255) cTGTATGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTgcgc < 2:716505/140‑1 (MQ=255) tATGCAGGCTGGCACAAGTTGCAGGATA‑T‑G‑GCGGGTGACCGCGATCATCGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGa < 2:223314/140‑1 (MQ=255) tGCAGGCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATg < 1:474359/140‑1 (MQ=255) gCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTtct > 2:501997/1‑140 (MQ=255) gCTGGCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGACCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTtct > 2:138970/1‑140 (MQ=255) ggCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATg < 1:145539/132‑1 (MQ=255) ggCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATg > 2:145539/1‑132 (MQ=255) ggCACAACTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTTCTCtt > 1:433955/1‑140 (MQ=255) aaCTTGCTGGATA‑T‑GAG‑GGGGGCCGGCGAGCATGGCGGAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTTCTCTTCAGTg < 1:358490/140‑1 (MQ=255) aCTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTTCTCTTCAGTGc < 1:413528/140‑1 (MQ=255) cTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGTAAGTCCGCCCTTTTATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTTCTCTTCAGTGcc < 2:269045/140‑1 (MQ=255) cTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTTCTCTTCAGTGcc < 2:433955/140‑1 (MQ=255) cTTGCTGGATA‑TGG‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCAAATCGGGCGGTTTATAGCGCATTGTGGGCTGACGCTTCTCTTCAGTGcc > 2:353000/1‑140 (MQ=255) | TCGTCGACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATA‑T‑G‑G‑GGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTTCTCTTCAGTGCC > NC_000913/1769339‑1769598 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |