New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 456834356 (1.140)3 (0.060) 3/264 4.5 5.1% coding (177/1233 nt) mdtM multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
?NC_000913 = 4568488 57 (1.210)coding (32/1233 nt) mdtM multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGAGACTGACGGCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACT  >  NC_000913/4568351‑4568625
                                                                                                                                         |                                                                                                                                          
agagACTGACGGCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTg                                                                                                                                          >  1:695832/1‑140 (MQ=255)
  agaCTGACGGCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAGAATCAACGCCATCGGGAAAAACAGCGTggc                                                                                                                                        >  1:525687/1‑140 (MQ=255)
    aCTGACGGCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTggcgg                                                                                                                                      >  2:575391/1‑140 (MQ=255)
        aCGGCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATg                                                                                                                                  >  2:18055/1‑140 (MQ=255)
        aCGGCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATg                                                                                                                                  >  2:497765/1‑140 (MQ=255)
        aCGGCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATg                                                                                                                                  >  2:190052/1‑140 (MQ=255)
          ggCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGc                                                                                                                                <  1:829455/140‑1 (MQ=255)
              gcagGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGt                                                                                                                            >  2:447190/1‑140 (MQ=255)
                       aGACTGACATCGGCAGTAAAATAACGTACAACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg                                                                                                                   <  1:326812/140‑1 (MQ=255)
                         aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAGAATCACCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                 <  2:525687/140‑1 (MQ=255)
                            gACATCGGCATTAAACTCACGTTCCCCATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa                                                                                                              <  1:400992/140‑1 (MQ=255)
                             aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAt                                                                                                             >  1:811456/1‑140 (MQ=255)
                              cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATa                                                                                                            >  1:71278/1‑140 (MQ=255)
                               aTCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaa                                                                                                           <  2:695832/140‑1 (MQ=255)
                               aTCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaa                                                                                                           <  1:678353/140‑1 (MQ=255)
                                   gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaaaaaa                                                                                                       >  1:681190/1‑140 (MQ=255)
                                                    cacaTTAATGATCCCAGGCTGGCTCTGATCCGTCGACTGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGgag                                                                                      <  1:399620/140‑1 (MQ=255)
                                                      caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGGAAATAAAGAGGCATAAAAAAAAACACCTTGTCCGGAGaa                                                                                    >  2:308456/1‑140 (MQ=255)
                                                         tAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAACAACACCTTGTCCGGAGAAccc                                                                                >  2:734458/1‑140 (MQ=255)
                                                          aaTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGGGGGCGAAATAAAGCGGGCCTACAAACAAATACCTGTTCGGAGGAccgc                                                                               >  2:328539/1‑138 (MQ=255)
                                                              aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGGATAACAAAAAACCCCCTGTGCGGAGAAACCCCAcc                                                                           >  2:152416/1‑139 (MQ=255)
                                                              aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGGATAACAAAAAAATCCTTGTCCGGGGAACCCCCACg                                                                           >  2:122585/1‑140 (MQ=255)
                                                              aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGAAAAAAAAATCGGTATAAAAAACAACTCCCTTTTCGGAGAACCCCAAcc                                                                           >  2:314136/1‑139 (MQ=255)
                                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACgggg                                                                        >  1:657849/1‑140 (MQ=255)
                                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGGATAACAAACAACTCCTTGTCCGGAGAACCCCAACgggg                                                                        >  1:421137/1‑140 (MQ=255)
                                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACgggg                                                                        >  1:459990/1‑140 (MQ=255)
                                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCAAAAAAAAAAAACCCTTTTCCGGGGAACCCCCAACggg                                                                         >  2:704386/1‑140 (MQ=255)
                                                                    ggCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAACAAATCCTTTTCCGGAGAACCCCAACGGGGgaa                                                                     >  1:668295/1‑140 (MQ=255)
                                                                     gCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAAATCCTTGTCCGGGGAACCCCCAAGGGGgaaa                                                                    >  2:656088/1‑140 (MQ=255)
                                                                       tGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                  <  2:45154/140‑1 (MQ=255)
                                                                       tGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                  <  1:447190/140‑1 (MQ=255)
                                                                       tGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                  <  1:122585/140‑1 (MQ=255)
                                                                         gATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGaa                                                                <  1:497765/140‑1 (MQ=255)
                                                                         gATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACAGGGCATAAAAAAAAACCCCTTTTCCGGGGGAACCCCACGGGGaaaaagga                                                                >  1:830578/1‑136 (MQ=255)
                                                                         gATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGCAAAAAAAACGGCATAAAAAAACACCTCTTATCCGGAGCAACCCCACGGGGAAAACGaa                                                                >  1:520988/1‑140 (MQ=255)
                                                                          aTCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCAAAAAAAACAACTCCTTTTGCGGAGAAACCCAACCGGGGAAACGaaa                                                               >  1:788892/1‑140 (MQ=255)
                                                                            cAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCGTAAAAAACAAAACCGTATCCGGGGAAACCCAGCGGGGGAAAAGaaaat                                                             >  2:355547/1‑138 (MQ=255)
                                                                              gATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCa                                                           <  1:734458/140‑1 (MQ=255)
                                                                               aTCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCaa                                                          <  2:681190/140‑1 (MQ=255)
                                                                               aTCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGGAAACGAAAATCaa                                                          >  1:785505/1‑140 (MQ=255)
                                                                                tCCGTCGACAGATACCCAGCGAGGTCATAAAAAATCACCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAAt                                                         <  1:308456/140‑1 (MQ=255)
                                                                                   gTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGCATAAAAAAAAACACCTTGTCCGGAGAACCCCAACGGGGGAAAAGAAAATCAAAAcc                                                      >  2:551195/1‑140 (MQ=255)
                                                                                   gTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCTTTTCCGGAGAAACCCAACGGGGGAAAAGAAAATCAATAcc                                                      >  1:201461/1‑140 (MQ=255)
                                                                                    tCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAACAAACAAACCCTTGTCCGGGGAAACCCAACGGGGGAAAAGAAAATCAATaacc                                                     >  2:517040/1‑137 (MQ=255)
                                                                                           aTACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAACTCCTTTTCCGGAGAAACCCCACGGGGAAAACGAAAATCAAAACCGCCGGTaa                                              >  2:521520/1‑140 (MQ=255)
                                                                                              cGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAAAAAACAAAACCCTTTCCGGAGAACCCCAAACGGGAAAAAGAAAATCCAAACCCTCGGGAAAGa                                           >  2:470132/1‑140 (MQ=255)
                                                                                                     aaGTCATACAAAATCAATGCCAACGGGAAAATCAGCGTGCCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                    <  2:232894/140‑1 (MQ=255)
                                                                                                     aaGTCATACAAAATCAACGCCATCGAGAAAAACAGCGGGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                    <  1:355547/140‑1 (MQ=255)
                                                                                                        tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                 <  2:811456/140‑1 (MQ=255)
                                                                                                                aaacAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                         <  1:6815/137‑1 (MQ=255)
                                                                                                                  tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAAAAAATCCTTTTCCCGGGAAACCCAACGGGGGAAAAGAAAATCAATAACCTCGGGAATGACGAAAAGCAGGTGAGAAggg                       >  2:615799/1‑140 (MQ=255)
                                                                                                                     aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa                    <  1:615799/140‑1 (MQ=255)
                                                                                                                           tCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCCTTTCCGGAGAACCCCAACGGGGAAAAAGAAAATCAATACCCTCGGGAATGACGAAAGGCAGGGGAGAAGGGCAACGAGAc              >  2:174183/1‑140 (MQ=255)
                                                                                                                            cGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTGTCCGGAGAAACCCCACGGGGGAAAAGAAAATTAATACCCTCGGGAATGACGAAAAGCAGGGGAGAAAGGGAACgagaat             >  2:800107/1‑138 (MQ=255)
                                                                                                                                 aaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaaa        <  1:551195/140‑1 (MQ=255)
                                                                                                                                  aaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAAt       <  1:152416/140‑1 (MQ=255)
                                                                                                                                     cAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTa    <  2:520988/140‑1 (MQ=255)
                                                                                                                                       gCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt  <  1:704386/140‑1 (MQ=255)
                                                                                                                                       gCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt  <  2:71278/140‑1 (MQ=255)
                                                                                                                                       gCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt  <  2:788892/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                          
AGAGACTGACGGCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACT  >  NC_000913/4568351‑4568625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.