| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4568343 | 56 (1.140) | 3 (0.060) | 3/264 | 4.5 | 5.1% | coding (177/1233 nt) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| ? | NC_000913 | = 4568488 | 57 (1.210) | coding (32/1233 nt) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGAGACTGACGGCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACT > NC_000913/4568351‑4568625 | agagACTGACGGCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTg > 1:695832/1‑140 (MQ=255) agaCTGACGGCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAGAATCAACGCCATCGGGAAAAACAGCGTggc > 1:525687/1‑140 (MQ=255) aCTGACGGCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTggcgg > 2:575391/1‑140 (MQ=255) aCGGCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATg > 2:18055/1‑140 (MQ=255) aCGGCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATg > 2:497765/1‑140 (MQ=255) aCGGCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATg > 2:190052/1‑140 (MQ=255) ggCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGc < 1:829455/140‑1 (MQ=255) gcagGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGt > 2:447190/1‑140 (MQ=255) aGACTGACATCGGCAGTAAAATAACGTACAACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg < 1:326812/140‑1 (MQ=255) aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAGAATCACCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg < 2:525687/140‑1 (MQ=255) gACATCGGCATTAAACTCACGTTCCCCATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa < 1:400992/140‑1 (MQ=255) aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAt > 1:811456/1‑140 (MQ=255) cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATa > 1:71278/1‑140 (MQ=255) aTCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaa < 2:695832/140‑1 (MQ=255) aTCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaa < 1:678353/140‑1 (MQ=255) gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaaaaaa > 1:681190/1‑140 (MQ=255) cacaTTAATGATCCCAGGCTGGCTCTGATCCGTCGACTGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGgag < 1:399620/140‑1 (MQ=255) caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGGAAATAAAGAGGCATAAAAAAAAACACCTTGTCCGGAGaa > 2:308456/1‑140 (MQ=255) tAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAACAACACCTTGTCCGGAGAA‑ccc > 2:734458/1‑140 (MQ=255) aaTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGGGGGCGAAATAAAGCGGGCCTACAAACAAATACCTGTTCGGAGGA‑ccgc > 2:328539/1‑138 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGGATAACAAAAAACCCCCTGTGCGGAGAA‑ACCCCAcc > 2:152416/1‑139 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGGATAACAAAAAAATCCTTGTCCGGGGAA‑CCCCCACg > 2:122585/1‑140 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGAAAAAAAAATCGGTATAAAAAACAACTCCCTTTTCGGAGAA‑CCCCAAcc > 2:314136/1‑139 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACgggg > 1:657849/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGGATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACgggg > 1:421137/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACgggg > 1:459990/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCAAAAAAAAAAAACCCTTTTCCGGGGAACCCCCAACggg > 2:704386/1‑140 (MQ=255) ggCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAACAAATCCTTTTCCGGAGAA‑CCCCAACGGGGgaa > 1:668295/1‑140 (MQ=255) gCTGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAAATCCTTGTCCGGGGAA‑CCCCCAAGGGGgaaa > 2:656088/1‑140 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACg < 2:45154/140‑1 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACg < 1:447190/140‑1 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACg < 1:122585/140‑1 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGaa < 1:497765/140‑1 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACAGGGCATAAAAAAAAACCCCTTTTCCGGGGGA‑ACCCCACGGGGaaaaagga > 1:830578/1‑136 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGCAAAAAAAACGGCATAAAAAAACACCTCTTATCCGGAGCA‑ACCCCACGGGGAAAACGaa > 1:520988/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCAAAAAAAACAACTCCTTTTGCGGAGAA‑ACCCAACCGGGGAAACGaaa > 1:788892/1‑140 (MQ=255) cAGATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCGTAAAAAACAAAACCGTATCCGGGGAA‑ACCCAGCGGGGGAAAAGaaaat > 2:355547/1‑138 (MQ=255) gATCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCa < 1:734458/140‑1 (MQ=255) aTCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCaa < 2:681190/140‑1 (MQ=255) aTCCGTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGGAAACGAAAATCaa > 1:785505/1‑140 (MQ=255) tCCGTCGACAGATACCCAGCGAGGTCATAAAAAATCACCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAAt < 1:308456/140‑1 (MQ=255) gTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGCATAAAAAAAAACACCTTGTCCGGAGAA‑CCCCAACGGGGGAAAAGAAAATCAAAAcc > 2:551195/1‑140 (MQ=255) gTCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCTTTTCCGGAGAA‑ACCCAACGGGGGAAAAGAAAATCAATAcc > 1:201461/1‑140 (MQ=255) tCGACAGATACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAACAAACAAACCCTTGTCCGGGGAA‑ACCCAACGGGGGAAAAGAAAATCAATaacc > 2:517040/1‑137 (MQ=255) aTACGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAACTCCTTTTCCGGAGAA‑ACCCCACGGGGAAAACGAAAATCAAAACCGCCGGTaa > 2:521520/1‑140 (MQ=255) cGCAGCGAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAAAAAACAAAACCCTTTCCGGAGAA‑CCCCAAACGGGAAAAAGAAAATCCAAACCCTCGGGAAAGa > 2:470132/1‑140 (MQ=255) aaGTCATACAAAATCAATGCCAACGGGAAAATCAGCGTGCCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg < 2:232894/140‑1 (MQ=255) aaGTCATACAAAATCAACGCCATCGAGAAAAACAGCGGGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg < 1:355547/140‑1 (MQ=255) tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg < 2:811456/140‑1 (MQ=255) aaacAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg < 1:6815/137‑1 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAAAAAATCCTTTTCCCGGGAA‑ACCCAACGGGGGAAAAGAAAATCAATAACCTCGGGAATGACGAAAAGCAGGTGAGAAggg > 2:615799/1‑140 (MQ=255) aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa < 1:615799/140‑1 (MQ=255) tCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCCTTTCCGGAGAA‑CCCCAACGGGGAAAAAGAAAATCAATACCCTCGGGAATGACGAAAGGCAGGGGAGAAGGGCAACGAGAc > 2:174183/1‑140 (MQ=255) cGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTGTCCGGAGAA‑ACCCCACGGGGGAAAAGAAAATTAATACCCTCGGGAATGACGAAAAGCAGGGGAGAAAGGGAACgagaat > 2:800107/1‑138 (MQ=255) aaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaaa < 1:551195/140‑1 (MQ=255) aaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAAt < 1:152416/140‑1 (MQ=255) cAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTa < 2:520988/140‑1 (MQ=255) gCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt < 1:704386/140‑1 (MQ=255) gCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt < 2:71278/140‑1 (MQ=255) gCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt < 2:788892/140‑1 (MQ=255) | AGAGACTGACGGCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACT > NC_000913/4568351‑4568625 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |