Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,779,794	T→C	G247G (GGT→GGC)	lldR →	DNA‑binding transcriptional dual regulator LldR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,779,794	0	T	C	100.0%	207.5 / NA	58	G247G (GGT→GGC)	lldR	DNA‑binding transcriptional dual regulator LldR
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (29/29);  total (29/29)

TCATTGACGCCATTTTTGCCGGTGATGCTGACGGGGCGCGTAAAGCAATGATGGCGCACCTTAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGTGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTCCACTATATGGATGGTGGTGCATATTCTGAATACACG  >  NC_000913/3779658‑3779928                                                                                                                                         |                                                                                                                                       tCATTGACGCCATTTTTGCCGGTGATGCTGACGGGGCGCGTAAAGCAATGATGGCGCACCTTAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAg                                                                                                                                     >  1:468325/1‑140 (MQ=255)  cATTGACGCCATTTTTGCCGGTGATGCTGACGGGGCGCGTAAAGCAATGATGGCGCACCTTAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGc                                                                                                                                    >  2:444149/1‑140 (MQ=255)     tGACGCCATTTTTGCCGGTGATGCTGACGGGGCGCGTAAAGCAATGATGGCGCACCTTAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATa                                                                                                                                 <  2:675146/140‑1 (MQ=255)       aCGCCATTTTTGCCGGTGATGCTGACGGGGCGCGTAAAGCAATGATGGCGCACCTTAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAAt                                                                                                                               >  2:148516/1‑140 (MQ=255)       aCGCCATTTTTGCCGGTGATGCTGACGGGGCGCGTAAAGCAATGATGGCGCACCTTAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAAt                                                                                                                               <  2:817602/140‑1 (MQ=255)                ttGCCGGTGATGCTGACGGGGCGCGTAAAGCAATGATGGCGCACCTTAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCg                                                                                                                      <  2:691864/140‑1 (MQ=255)                     ggTGATGCTGACGGGGCGCGTAAAGCAATGATGGCGCACCTTAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGga                                                                                                                 >  1:622533/1‑140 (MQ=255)                         aTGCTGACGGGGCGCGTAAAGCGATGATGGCACACGTTAGTTTTGTTCTCACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGaaa                                                                                                             <  2:281392/140‑1 (MQ=255)                          tGCTGACGGGGCGCGTAAAGCAATGATGGCGCACCTTAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGaaaa                                                                                                            >  2:19697/1‑140 (MQ=255)                              gACGGGGCGCGTAAAGCCATGATGGCGCACCCTAGATTTCTTCACACCCCCATGAAACGATTCGATGAAGATCAGGCTCGCAACGCACGGATTACCCGACTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGc                                                                                                        <  2:315943/140‑1 (MQ=255)                                     cgcgTAAAGCAATGATGGCGCACCTTAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGatta                                                                                                 >  1:181672/1‑140 (MQ=255)                                      gcgTAAAGCAATGATGGCGCACCTTAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGattat                                                                                                >  2:406839/1‑140 (MQ=255)                                         tAAAGCAATGATGGCGCACCTTAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTc                                                                                             >  2:726978/1‑140 (MQ=255)                                              cAATGATGGCGCACCTTAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGcag                                                                                        <  2:622533/140‑1 (MQ=255)                                              cAATGATGGCGCACCTTAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGcag                                                                                        <  2:181672/140‑1 (MQ=255)                                                           ccTTAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGACAAAAACGAATGATTATTTCCGGAGCCAGCGATTATcg                                                                           >  1:262016/1‑140 (MQ=255)                                                            cTTAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATcgc                                                                          >  1:635941/1‑140 (MQ=255)                                                             ttAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATcgcg                                                                         <  1:726978/140‑1 (MQ=255)                                                             ttAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATcgcg                                                                         >  1:441762/1‑140 (MQ=255)                                                                gTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGTCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGcgccg                                                                      <  1:751149/140‑1 (MQ=255)                                                                      ttCACACCACCATGAAACGATTCGATGAATATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAgcgc                                                                >  2:555496/1‑140 (MQ=255)                                                                      ttCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAgcgc                                                                >  2:63472/1‑140 (MQ=255)                                                                      ttCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAgcgc                                                                >  2:644691/1‑140 (MQ=255)                                                                           accaccATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGc                                                           >  1:33340/1‑140 (MQ=255)                                                                                caTGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGGTTATTTCCACAGCCAGGGATGATAGCGCCGGAGCGCAACGCATTCt                                                      >  1:219683/1‑140 (MQ=255)                                                                                caTGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCt                                                      >  1:105395/1‑140 (MQ=255)                                                                                  tGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTgc                                                    >  1:666870/1‑140 (MQ=255)                                                                                  tGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTgc                                                    >  2:793680/1‑140 (MQ=255)                                                                                  tGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTgc                                                    >  2:677152/1‑140 (MQ=255)                                                                                    aaaCGATTCGATGAAGATCAGGCTCGCCACGCACGGATTCCCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTgccg                                                  <  1:194067/140‑1 (MQ=255)                                                                                        gATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGt                                              <  2:468325/140‑1 (MQ=255)                                                                                        gATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGt                                              <  1:148516/140‑1 (MQ=255)                                                                                          ttCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTc                                            >  1:62322/1‑140 (MQ=255)                                                                                             gATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTg                                         <  1:63472/140‑1 (MQ=255)                                                                                               tGAATATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGtt                                       <  1:555496/140‑1 (MQ=255)                                                                                               tGAAGATCAGGCTCGCCTCGCATGGATTACCCGCCTGCCTGGCGAGCACAATGAGCATTCGAGGGAGAAAAACGCATGGTTATTCCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGtt                                       <  2:219683/140‑1 (MQ=255)                                                                                               tGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGtt                                       <  2:33340/140‑1 (MQ=255)                                                                                               tGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGtt                                       <  2:105395/140‑1 (MQ=255)                                                                                                gAAGATCAGGCTCGCCTCGCACGGATTCCCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTc                                      <  2:560361/140‑1 (MQ=255)                                                                                                gAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTc                                      <  1:644691/140‑1 (MQ=255)                                                                                                gAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTc                                      <  2:635941/140‑1 (MQ=255)                                                                                                gAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTc                                      <  2:643378/140‑1 (MQ=255)                                                                                                 aaGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTcc                                     >  2:119043/1‑140 (MQ=255)                                                                                                  aGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTCCa                                    <  2:187492/140‑1 (MQ=255)                                                                                                   aaTCAGGCTCGCCACGCACGGATTCCCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTCCAc                                   <  2:666156/139‑1 (MQ=255)                                                                                                    aTCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTc                                      >  1:639307/1‑136 (MQ=255)                                                                                                    aTCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTc                                      <  2:639307/136‑1 (MQ=255)                                                                                                    aTCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTCCACt                                  >  2:72437/1‑140 (MQ=255)                                                                                                           tCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTCCACTATatgga                           <  1:444149/140‑1 (MQ=255)                                                                                                           tCGCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTCCACTATatgga                           >  2:536540/1‑140 (MQ=255)                                                                                                             gCCACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTCCACTATatggatg                         >  1:193739/1‑140 (MQ=255)                                                                                                              ccACGCACGGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTCCACTATatggatgg                        >  1:562615/1‑140 (MQ=255)                                                                                                               cacgcacgGATTACCGGCCTGCCCGCCGAGCATAATGTGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGTCGCCGTTCCTGTTCCACTATATGGAtggt                       <  1:332300/140‑1 (MQ=255)                                                                                                               cacgcacgGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTCCACTATATGGAtggt                       <  1:624626/140‑1 (MQ=255)                                                                                                                    acgGATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTCCACTATATGGATGGTGGTGc                  <  1:406839/140‑1 (MQ=255)                                                                                                                      ggATTACCCGCCTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTCCACTATATGGATGGTGGTGCat                <  2:405296/140‑1 (MQ=255)                                                                                                                                ccTGCCCGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTCCACTATATGGATGGTGGTGCATATTCTGAATa      >  1:179294/1‑140 (MQ=255)                                                                                                                                    cccGGCGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTCCACTATATGGTTGCTGGTGCTTATTCTGAATACACg  >  1:246343/1‑140 (MQ=255)                                                                                                                                         |                                                                                                                                       TCATTGACGCCATTTTTGCCGGTGATGCTGACGGGGCGCGTAAAGCAATGATGGCGCACCTTAGTTTTGTTCACACCACCATGAAACGATTCGATGAAGATCAGGCTCGCCACGCACGGATTACCCGCCTGCCCGGTGAGCATAATGAGCATTCGAGGGAGAAAAACGCATGATTATTTCCGCAGCCAGCGATTATCGCGCCGCAGCGCAACGCATTCTGCCGCCGTTCCTGTTCCACTATATGGATGGTGGTGCATATTCTGAATACACG  >  NC_000913/3779658‑3779928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑