| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,451,646 | A→G | S197G (AGC→GGC) | ytfR → | galactofuranose ABC transporter putative ATP binding subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,451,646 | 0 | A | G | 97.6% | 140.9 / NA | 42 | S197G (AGC→GGC) | ytfR | galactofuranose ABC transporter putative ATP binding subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (16/25); total (16/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
GCAAATCGTCGCTATTTGTCGGGCTATCGATCTCTCTGCCAAAGTGCTGATCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCAGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCAGATCGAACTGGTAA > NC_000913/4451510‑4451772 | gcaAATCGTCGTTTTTTGTCGGGCTATCGATTTCTGTGCAAAAGTGCTAACCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGcc < 2:310541/140‑1 (MQ=255)gcaAATCGTCGCTATTTGTCGGGCTATCGATCTCTCTGCCAAAGTGCTGATCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGcc < 2:650345/140‑1 (MQ=255) gtcgCTATTTGTCGGGCTATCGATCTCTCTGCCAAAGTGCTGATCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGAtttt > 2:651468/1‑140 (MQ=255) cgCTATTTGTCGGGCTATCGATCTCTCTGCCAAAGTGCTGATCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTg > 2:712175/1‑140 (MQ=255) gCTATTTGTCGGGCTATCGATCTCTCTGCCAAAGTGCTGATCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGt < 2:410440/140‑1 (MQ=255) tGTCGGGCTATCGATCCTTCTGTCAAAGTGCTGATCCTCCATGACCCCCCCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGtcactca < 2:248602/140‑1 (MQ=255) gggCTATCGATCTCTCTGCCAAAGTGCTGATCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACttt < 2:738409/140‑1 (MQ=255) ggCTATCGATCTCTCTGCCAAAGTGCTGATCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTtc < 2:416441/140‑1 (MQ=255) gCTATCGATCTCTCTGCCAAAGTGCTGATCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGtcactca < 2:521673/134‑1 (MQ=255) gCTATCGATCTCTCTGCCAAAGTGCTGATCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGtcactca > 1:521673/1‑134 (MQ=255) gCTATCGATCTCTCTGCCAAAGTGCTGATCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCAATCGCGGAGTCGGCGTGATTTGTGTCACTCACTTtct > 1:220368/1‑140 (MQ=255) tATCGATCTCTCTGCCAGAGTGTTGATCCTCTATGAACCCACCGCCAGCCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCg < 2:220368/140‑1 (MQ=255) ttcaaTCTCTCTGCCAAAGTGCTGTTCCTCGATGACCCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGa < 2:752683/136‑1 (MQ=255) gttctctctcCAAAAGTGCTGACCCTCGATGACCCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGTGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCa < 2:137102/138‑1 (MQ=255) gATCTCCCTGCAAAAGTGCTGATCCTCGATGACCCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCa < 1:754381/140‑1 (MQ=255) tctctcTGCCAAAGTGCTGATCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAgg < 1:1077/140‑1 (MQ=255) tctctcTGCAAAAGTGCTGACCGTCAATGTACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAgg < 1:370169/140‑1 (MQ=255) tctGCCAAAGTGCTGATCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAg < 2:786429/135‑1 (MQ=255) tctGCCAAAGTGCTGATCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAg > 1:786429/1‑135 (MQ=255) tctGCCAAAGTGCTGATCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTa > 1:566343/1‑140 (MQ=255) tctGCCAAAGTGCTGATCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTa > 1:51537/1‑140 (MQ=255) ggCTGATCCTCGACGACCCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGc < 2:205110/139‑1 (MQ=255) cTGATCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGa < 1:555231/140‑1 (MQ=255) ttCCTCGATAACCCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCg < 2:753152/139‑1 (MQ=255) aTCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCg < 2:566343/140‑1 (MQ=255) cGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCa > 1:465882/1‑140 (MQ=255) gATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCAc < 1:651468/140‑1 (MQ=255) aCCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCt > 2:536198/1‑140 (MQ=255) tctcGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCa < 2:465882/140‑1 (MQ=255) aGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGc > 2:693165/1‑140 (MQ=255) ggAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCt > 2:793580/1‑140 (MQ=255) gggTTACTTTTTGTCCTGATGCTTCAGTTTCGCGATCCCGGCGTCAGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGa < 1:327310/138‑1 (MQ=255) tACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGaa > 2:677145/1‑137 (MQ=255) tACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGaa < 1:677145/137‑1 (MQ=255) tGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGTAGTTTCGTCGGCTCTCGGGAAACGTGCGAGc > 2:323605/1‑140 (MQ=255) tGACCTGATGCGTCAGCTGCGCGATCGCGGCGCCCGCCTGATTTTTGTCACCCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCCCCGTCTTTTGCAACCGCCGTTTCGTGGGCTATCCGGGAATGCGCGAGc > 2:371481/1‑140 (MQ=255) cTGATGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTAcc < 2:51537/140‑1 (MQ=255) aTGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGc < 2:176508/133‑1 (MQ=255) aTGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGc > 1:176508/1‑133 (MQ=255) aTGCGTCAGTTGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCa > 1:795527/1‑140 (MQ=255) aGTTGCGCGATCGTGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCAGATCGaa < 2:408858/140‑1 (MQ=255) ttGCGCGATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCAGATCGAACt < 1:323605/140‑1 (MQ=255) cgATCGCGGCGTCGGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTCTCGTAGGCGGTCGGGAGACGTGCGAGCTACCGCAGATCGAACTGGTaa > 2:319851/1‑140 (MQ=255) | GCAAATCGTCGCTATTTGTCGGGCTATCGATCTCTCTGCCAAAGTGCTGATCCTCGATGAACCCACCGCCAGTCTCGACACCCAGGAAGTGGAGTTACTGTTTGACCTGATGCGTCAGTTGCGCGATCGCGGCGTCAGCCTGATTTTTGTCACTCACTTTCTCGATCAGGTCTATCAGGTCAGCGATCGGATCACCGTCTTACGCAACGGCAGTTTCGTAGGCTGTCGGGAAACGTGCGAGCTACCGCAGATCGAACTGGTAA > NC_000913/4451510‑4451772 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |