Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 40,989 C→T G315S (GGC→AGC)  caiT ← L‑carnitine:gamma‑butyrobetaine antiporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_00091340,9890CT100.0% 140.9 / NA 41G315S (GGC→AGC) caiTL‑carnitine:gamma‑butyrobetaine antiporter
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (17/24);  total (17/24)

CCAGGTTGACGCTGTCAGCCCCAGCACCATGCCGAAGCACAGTTCACGCACAGTACGACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCCCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGTGAAGTAGTTCATGATGAAGCTGGCACCGCTGACAATGAACACCCAACCC  >  NC_000913/40852‑41122
                                                                                                                                         |                                                                                                                                     
ccAGGTTGACGCTGTCAGCCCCAGCACCATGCCGAAGCACAGTTCACGCACAGTACGACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGctct                                                                                                                                     >  2:93634/1‑140 (MQ=255)
ccAGGTTGACGCTGTCAGCCCCAGCACCATGCCGAAGCACAGTTCACGCACAGTACGACCACGGGAGATGCGGGCGAGGAAGATACTCATCCGGATAGCAAAAACCACTCACCATGCACAGTAGAACACGGTCCAGctct                                                                                                                                     >  2:271132/1‑140 (MQ=255)
   ggTTGACGCTGTCAGCCCCAGCACCATGCCGAAGCACAGTTCACGCACAGTACGACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCg                                                                                                                                  >  2:784066/1‑140 (MQ=255)
         cGCTGTCAGCCCCAGCACCATGCCGAAGCACAGTTCAAGCACAGTACGACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAgc                                                                                                                            <  1:396730/140‑1 (MQ=255)
                    ccAGCACCATGCCGAAGCACAGTTCACGCACAGTACGACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCg                                                                                                                 <  2:788242/140‑1 (MQ=255)
                      aGCACCATGCCGAAGCACAGTTCACGCACAGTACGACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGAt                                                                                                               <  1:518902/140‑1 (MQ=255)
                       gCACCATGCCGAAGCACAGTTCACGCACAGTACGACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATg                                                                                                              >  2:485452/1‑140 (MQ=255)
                           cATGCCGAAGCACAGTTCACGCACAGTACGACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGAt                                                                                                          <  1:425399/140‑1 (MQ=255)
                           cATGCCGAAGCACAGTTCACGCACAGTACGACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGAt                                                                                                          <  1:93634/140‑1 (MQ=255)
                           cATGCCGAAGCACAGTTCACGCACAGTACGACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGAt                                                                                                          <  1:620047/140‑1 (MQ=255)
                           cATGCCGAAGCACAGTTCACGCACAGTACGACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGAt                                                                                                          <  1:792328/140‑1 (MQ=255)
                           cATGCCGAAGCACAGCTCACGCACATTACCACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGAt                                                                                                          <  1:271132/140‑1 (MQ=255)
                           cATGCCGAAGCACAGATCACGCCCATTACTACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGAt                                                                                                          <  1:318304/140‑1 (MQ=255)
                            aTGCCGAAGCACAGTTCACGCACAGTACGACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGAt                                                                                                               >  1:672370/1‑134 (MQ=255)
                            aTGCCGAAGCACAGTTCACGCACAGTACGACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGAt                                                                                                               <  2:672370/134‑1 (MQ=255)
                                cGAAGCACAGTTCACGCACAGTACGACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGta                                                                                                     <  1:755948/140‑1 (MQ=255)
                                          ttCACGCACAGTACGACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAacaaca                                                                                           >  2:458092/1‑140 (MQ=255)
                                                     tACGACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGa                                                                                <  1:821825/140‑1 (MQ=255)
                                                              gggAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGc                                                                       <  2:796207/140‑1 (MQ=255)
                                                               ggAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCa                                                                      >  2:650797/1‑140 (MQ=255)
                                                                        ggCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCa                                                             >  2:718698/1‑140 (MQ=255)
                                                                        ggCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCa                                                             >  2:189488/1‑140 (MQ=255)
                                                                                aGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCg                                                     <  1:784066/140‑1 (MQ=255)
                                                                                  aTACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGt                                                   <  2:48958/140‑1 (MQ=255)
                                                                                  aTACTCATCTGGATAACATAAACCATCCACCATGCCCCGTAGAACACGTTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGt                                                   <  1:214971/140‑1 (MQ=255)
                                                                                       cATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGTGAagt                                              <  1:485452/140‑1 (MQ=255)
                                                                                          cTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGTGAagtagt                                           <  1:7630/140‑1 (MQ=255)
                                                                                           tGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGTGAAGTAGtt                                          <  1:189488/140‑1 (MQ=255)
                                                                                             gATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGTGAAGTAGTTCa                                        >  2:633474/1‑140 (MQ=255)
                                                                                                  cATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGTGAAGTAGTTCatgatg                                   >  2:27767/1‑140 (MQ=255)
                                                                                                  cATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGTGAAGTAGTTCatgatg                                   >  2:162419/1‑140 (MQ=255)
                                                                                                    tAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAACAACATCCCAACCGAAGCGGTGAAGTAGATCATGATGaa                                 >  1:397109/1‑140 (MQ=255)
                                                                                                       aTCACCCACCATGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGTGAAGTAGTTCATGATGAAGCt                              >  1:769567/1‑140 (MQ=255)
                                                                                                                caTGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCAAATCGGTTAAGAAGATCATGATGAAGCTGGCACCGCt                     >  1:304068/1‑140 (MQ=255)
                                                                                                                 aTGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGTGAAGTAGTTCatgat                                    >  1:826875/1‑124 (MQ=255)
                                                                                                                 aTGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGTGAAGTAGTTCatgat                                    <  2:826875/124‑1 (MQ=255)
                                                                                                                  tGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGTGAAGTAGTTCATGATGAAGCTGGCACCGc                      <  2:162360/137‑1 (MQ=255)
                                                                                                                  tGCCCAGTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGTGAAGTAGTTCATGATGAAGCTGGCACCGc                      >  1:162360/1‑137 (MQ=255)
                                                                                                                        gTAGAACACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGTGAAGTAGTTCATGATGAAGCTGGCACCGCTGACAATGa             <  1:718698/140‑1 (MQ=255)
                                                                                                                            aaCACGGTCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGTGAAGTAGTTCATGATGAAGCTGGCACCGCTGACAATGAacac         <  2:769567/140‑1 (MQ=255)
                                                                                                                                   tCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGTGAAGTAGTTCATGATGAAGCTGGCACCGCTGAc                  >  2:716340/1‑124 (MQ=255)
                                                                                                                                   tCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGTGAAGTAGTTCATGATGAAGCTGGCACCGCTGAc                  <  1:716340/124‑1 (MQ=255)
                                                                                                                                   tCCAGCTCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGTGAAGTAGTTCATGATGAAGCTGGCACCGCTGACAATGAACacccaaccc  >  1:89745/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                     
CCAGGTTGACGCTGTCAGCCCCAGCACCATGCCGAAGCACAGTTCACGCACAGTACGACCACGGGAGATGCGGGCGAGGAAGATACTCATCTGGATAGCATAAATCACCCACCATGCCCAGTAGAACACGGTCCAGCCCTGCGGGAAGCCGCCTTTAGCGATGGGATCGGTATAGAACAACATGCGCGGCAGATACATCAGCAACATCCCCACCGAATCGGTGAAGTAGTTCATGATGAAGCTGGCACCGCTGACAATGAACACCCAACCC  >  NC_000913/40852‑41122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑