| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 879,527 | A→G | S262S (TCA→TCG) | yliI → | aldose sugar dehydrogenase YliI |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 879,527 | 0 | A | G | 95.1% | 130.5 / ‑3.9 | 41 | S262S (TCA→TCG) | yliI | aldose sugar dehydrogenase YliI |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (19/20); total (20/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAAGGAATGGCGATGAATCCGTGGAGTAATGCACTGTGGCTGAATGAACATGGCCCGCGCGGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCAGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCTGTGAGCGGCATGGCCTTCTATAACAGCGATAAATTCCCCCAGTGGCAGC > NC_000913/879390‑879657 | cAAGGAATGGCGATGAATCCGTGGAGTAATGCACTGTGGCTGAATGAACATGGCCCGCGCGGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCTCTGCCAACCTGGGGAATCAACTATTCggg > 1:308009/1‑140 (MQ=255)cAAGGAATGGCGATGAATCCGTGGAGTAATGCACTGTGGCTGAATGAACATGGCCCGCGCGGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCggg > 2:101935/1‑140 (MQ=255)cAAGGAATGGCGATGAATCCGTGGAGTAATGCACTGTGGCTGAATGAACATGGCCCGCGCGGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCggg > 2:661662/1‑140 (MQ=255) ggAATGGCGATGAATCCGTGGAGTAATGCACTGTGGCTGAATGAACATGGCCCGCGCGGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGTCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCtt < 1:695782/140‑1 (MQ=255) tGGCGATGAATCCGTGGAGTAATGCACTGTGGCTGAATGAACATGGCCCGCGCGGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAg > 2:540062/1‑140 (MQ=255) cGTGGAGTAATGCACTGTGGCTGAATGAACATGGCCCGCGCGGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCg < 2:415677/140‑1 (MQ=255) cGTGGAGTAATGCACTGTGGCTGAATGAACATGGCCCGCGCGGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCg < 1:739353/140‑1 (MQ=255) tGCACTGTGGCTGAATGAACATGGCCCGCGCGGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGgaga > 2:721577/1‑140 (MQ=255) cTGAATGAACATGGCCCGCGCGGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCgg > 2:22958/1‑140 (MQ=255) aaCATGGCCCGCGCGGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAg > 1:177891/1‑140 (MQ=255) aaCATGGCCCGCGCGGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAg > 2:656670/1‑140 (MQ=255) cATGGCCCGCGCGGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCa < 1:540062/140‑1 (MQ=255) cATGGCCCGCGCGGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCa > 2:476009/1‑140 (MQ=255) cATGGCCCGCGCGGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCa < 2:45326/140‑1 (MQ=255) tGGCCCGCGCGGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAAc < 1:656670/140‑1 (MQ=255) gCCCGCGCGGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCt > 2:58413/1‑140 (MQ=255) cgcgGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGGAAGGGGAGATCATCACCGGGAGCGAGCAACCTGtttt > 1:218870/1‑140 (MQ=255) cgcgGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGtttt > 2:770400/1‑140 (MQ=255) gtgATGAAATTAATATCCCGCATAAAGGCAACAACAACGACTGGCCGCGGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTgg < 2:308009/140‑1 (MQ=255) gaAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGa < 2:107196/140‑1 (MQ=255) aTTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAACAACCTGTTTTTTACTGGAAAGATTc > 2:517737/1‑140 (MQ=255) tAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGc > 2:52391/1‑140 (MQ=255) tAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGc > 2:792835/1‑140 (MQ=255) tAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGc > 2:140733/1‑140 (MQ=255) ccGCAAAAAGGCAAAAATTACGACTGGCCGCCGGCGACCAGGGGAATCTACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCtgt < 2:228584/140‑1 (MQ=255) cGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCtgtg > 2:744295/1‑140 (MQ=255) gCAAAAGGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCTGTGa > 2:568923/1‑140 (MQ=255) cAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGGAACCTGTCTTTGACGGGAAAGGTTCGCCCGCTGTGAg > 1:228584/1‑140 (MQ=255) cAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGACGGGACCGAGCAGCCTATTTTTTACTGGAACGATTCGCCCGCTGTGAg > 2:239822/1‑140 (MQ=255) aaaaGGCAAAAACTACGCCTGGCCGCTGGCAGCCTCGGGTATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCTGTGAGCg < 2:218870/140‑1 (MQ=255) gggCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCTGTGAGCGGCa < 1:568923/139‑1 (MQ=255) aGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCTGTGAGCGGCa < 2:177891/140‑1 (MQ=255) aGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCTGTGAGCGGCa < 1:52391/140‑1 (MQ=255) aGGCAAAAACTACGGCTGGCCGCTGCCAATCTGGGGACTCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCTGTGAGCGGCa < 1:239822/140‑1 (MQ=255) aGGCAAAAACTACGGCTCGCCGCTGGCAACCCGGGAAATCAACTATTCAGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCTGTGAGCGGCa < 2:235160/140‑1 (MQ=255) cAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCTGTGAGCGGCATgg < 1:140733/140‑1 (MQ=255) cAAAAACTACGGCTGACCGCTGTCATCCTAGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCTGTGAGCGGCATgg < 1:403804/140‑1 (MQ=255) aaaaCTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCTGTGAGCGGCATGGcc < 1:770400/140‑1 (MQ=255) ggCTGGCCGCTGGCAACCTGGGAAATCAACTTTTCGGGCCTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCTGTGAGCGGCATGGCCTTCTATaa < 2:357209/140‑1 (MQ=255) ggCCGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCTGTGAGCGGCATGGCCTTCTATAACAGc > 1:55987/1‑140 (MQ=255) ccGCTGGCAACCTGGGGAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCTGTGAGCGGCATGGCCTTCTATAACAGCGa < 2:55987/140‑1 (MQ=255) tGGCAACCTGGGGAATCACCTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTG‑TTTTTACTGGAAAGATTCGCCCGCTGTGAGCGGCATGGCCTTCTATAACAGCGATAAAt < 1:661662/140‑1 (MQ=255) gggAATCAACTATTCGGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCTGTGAGCGGCATGGCCTTCTATAACAGCGATAAATTCCCCCAGt > 1:586890/1‑140 (MQ=255) cAACTATTCAGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCTGTGAGCGGCATGGCCTTCTATAACAGCGATAAATTCCCCCAGTGgcagc > 2:410294/1‑140 (MQ=255) | CAAGGAATGGCGATGAATCCGTGGAGTAATGCACTGTGGCTGAATGAACATGGCCCGCGCGGTGGTGATGAAATTAATATCCCGCAAAAAGGCAAAAACTACGGCTGGCCGCTGGCAACCTGGGGAATCAACTATTCAGGCTTTAAGATACCGGAAGCGAAAGGGGAGATCGTCGCCGGGACCGAGCAACCTGTTTTTTACTGGAAAGATTCGCCCGCTGTGAGCGGCATGGCCTTCTATAACAGCGATAAATTCCCCCAGTGGCAGC > NC_000913/879390‑879657 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |