| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,055,339 | A→G | S280S (AGT→AGC) | torS ← | sensory histidine kinase TorS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,055,339 | 0 | A | G | 97.9% | 164.0 / NA | 48 | S280S (AGT→AGC) | torS | sensory histidine kinase TorS |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (26/20); minor base C (0/1); total (26/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCGCTTTTTCCAGATGCGCCAGTCCGTGCTGATTACGCAGCTCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCACTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTA > NC_000913/1055203‑1055468 | tCGCTTTTTCCAGATGCGCCAGTCCGTGCTGATTACGCAGCTCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTg > 1:503903/1‑140 (MQ=255)tCGCTTTTTCCAGATGCGCCAGTCCGTGCTGATTACGCAGCTCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTg > 1:435232/1‑140 (MQ=255)tCGCTTTTTCCAGATGCGCCAGTCCGTGCTGATTACGCAGCTCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTg > 1:359910/1‑140 (MQ=255)tCGCTTTTTCCAGATGCGCCAGTCCATGCTGATTACGGAGCTCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTg < 1:375494/140‑1 (MQ=255) cGCTTTTTCCAGATGCGCCAGTCCGTGCTGATTACGCAGCTCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCttt < 2:99455/140‑3 (MQ=255) cGCTTTTTCCAGATGCGCCAGTCCGTGCTGATTACGCAGCTCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGt < 2:14206/140‑1 (MQ=255) cGCTTTTTCCAGATGCGCCAGTCCGTGCTGATTACGCAGATCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGt < 2:359910/140‑1 (MQ=255) tGCGCCAGTCCGTGCTGATTACGCAGCTCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTACGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAg > 2:646801/1‑140 (MQ=255) ccAGTCCGTGCTGATTACGCAGCTCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGcc > 2:552358/1‑140 (MQ=255) aGTCCGTGCTGATTACGCAGCTCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAg < 2:8070/140‑1 (MQ=255) aGTCCGTGCTGATTACGCAGCTAAATGGTGTTGACGAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAg < 2:314249/140‑1 (MQ=255) tGCTGATTACGCAGCTCAATGGTGTCGACCAGCTGAGTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATc < 2:587393/140‑1 (MQ=255) gCTGATTACGCAGCTGAATGGTGTCAACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCg < 1:353384/140‑1 (MQ=255) gCTGATTACGCAGCTCAATGGTTTCGACCAGATGAGTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCg < 2:365099/140‑1 (MQ=255) gCTGATTACGCAGCTCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCg < 1:11962/140‑1 (MQ=255) gCTGATTACGCAGCTCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCGGATTTCGATGTGCTACTGATAAAGCGCCAGCAAATCg > 1:245031/1‑140 (MQ=255) tGATTACGCAGCTCACTGGTGTAGAGCAGCTGACTGATTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCt < 1:386040/140‑1 (MQ=255) aTTACGCAGCTCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCtat > 1:58943/1‑140 (MQ=255) ttACGCAGCTCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCtata < 2:503903/140‑1 (MQ=255) ttACGCAGCTCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCtata < 2:435232/140‑1 (MQ=255) ttACGCAGCTCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCtata > 1:764635/1‑140 (MQ=255) tCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAAc < 2:586760/140‑1 (MQ=255) tCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACCGCGCCAGAAAAACGATATATTCGCTAACGGTAGTTaa > 1:397826/1‑140 (MQ=255) tCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTaa > 1:552749/1‑140 (MQ=255) gCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACgttgtt > 2:499869/1‑140 (MQ=255) ctgactTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGAc < 1:499869/140‑1 (MQ=255) tgactTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGGGCCAGCAAGTCGCTATATTGGCTAAAGGTAATTAACGTTGTTGCGAcc > 2:234508/1‑140 (MQ=255) ctactaAACTGCGCGCACTGGGCGATGTTTTTTTGTGTGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACg < 1:366242/140‑1 (MQ=255) taAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCAc < 1:709012/135‑1 (MQ=255) taAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCAc > 2:709012/1‑135 (MQ=255) taAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACGAaca < 2:24896/140‑1 (MQ=255) aaCTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGCTGTTGCGACCTGCGCACGAACAcc < 2:764635/140‑1 (MQ=255) cgcgAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTGGTTAACGTTGTCGCTACCTGCTCACGAACACCCGGAt > 1:375742/1‑140 (MQ=255) cgcgAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTCGTTAACGTTGTAGCAACCTGCCCACGAACACCCGGAt > 1:353833/1‑140 (MQ=255) cgcgAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGAt > 1:350/1‑140 (MQ=255) cgcgAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGAt > 2:509127/1‑140 (MQ=255) aCTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCa > 1:800220/1‑140 (MQ=255) cTGGGCGAGGTTATTTTTTGCGAGAGTTTGGCGGTTATTTCTGATTTCTCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCaa < 2:397826/140‑1 (MQ=255) tGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAAt < 2:12098/140‑1 (MQ=255) tgCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGtt > 1:93358/1‑140 (MQ=255) tgCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGtt > 1:510649/1‑140 (MQ=255) tgCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGtt > 1:184711/1‑140 (MQ=255) gCGAGAGTTTGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTg > 1:429799/1‑140 (MQ=255) tGTAGGTGATTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAAtttt < 1:509127/140‑1 (MQ=255) gTGATTGCTGATTTCCCTGTCCTGCCGATTCAGCGCCTGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCg < 1:355045/140‑1 (MQ=255) aTTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCat > 2:601548/1‑140 (MQ=255) aTTGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAAAGCGAATTTGCCGCCGTTGCAGAATTTTCACCGCat > 2:355045/1‑140 (MQ=255) tGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCTGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCatta > 1:433166/1‑140 (MQ=255) tGCTGATTTCGCTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCatta > 2:752840/1‑140 (MQ=255) | TCGCTTTTTCCAGATGCGCCAGTCCGTGCTGATTACGCAGCTCAATGGTGTCGACCAGCTGACTGACTTCGCTACTAAACTGCGCGAACTGGGCGATGTTATTTTGTGCGAGAGTTTGTAGGTGATTGCTGATTTCACTGTCCTGCTGATACAGCGCCAGCAAATCGCTATATTGGCTAACGGTAGTTAACGTTGTTGCGACCTGCGCACGAACACCCGGATCTTCAATGCGTATTTGCCGACGTTGCAGAATTTTCACCGCATTA > NC_000913/1055203‑1055468 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |