| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,942,289 | (C)5→6 | coding (279/918 nt) | gcvA ← | DNA‑binding transcriptional dual regulator GcvA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,942,284 | 1 | . | C | 93.2% | 240.1 / 8.8 | 73 | coding (284/918 nt) | gcvA | DNA‑binding transcriptional dual regulator GcvA |
| Reads supporting (aligned to +/- strand): ref base . (1/4); new base C (35/33); total (36/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.58e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
ATCCGCCAGCTTATCTTCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑G‑CC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTGAACGATTACGGCGGCGGAACAG > NC_000913/2942151‑2942414 | atcCGCCAGCTTATCTTCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCCACCAATGACTGGCGAAAATGGGGAGAAAACCAACCGTCAAC‑G‑cc‑c‑c‑cc > 2:716866/1‑139 (MQ=255)atcCGCCAGCTTATCTTCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATAGCGAAACGGGGGAGGAAACTGTCCGTCAAC‑G‑cc‑c‑c‑cc > 1:465322/1‑139 (MQ=255) tcCGCCAGCTTATCTTCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑G‑cc‑c‑c‑cct > 2:1029935/1‑138 (MQ=255) tcCGCCAGCTTATCTTCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑G‑cc‑c‑c‑cct > 2:833819/1‑138 (MQ=255) tcCGCCAGCTTATCTTCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑G‑cc‑c‑c‑cct > 1:211442/1‑138 (MQ=255) gCCAGCTTATCTTCCCGACGATAAACCGCCTGGATTCTAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑G‑cc‑c‑c‑ccttgg < 1:620751/140‑6 (MQ=255) ccAGCTTATCTTCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAGTGAATGGCCAAAATGGGGAGTAAACGGACCTTCAAC‑G‑cc‑c‑c‑ccttgcc > 2:620751/1‑134 (MQ=255) cAGCTTATCTTCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGgcg > 2:1125879/1‑140 (MQ=255) gCTTATCTTCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCt > 2:1494455/1‑140 (MQ=255) ctaaTCTTCCTGACGCTCAACCGCCAGGACTCGAACGACAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTa < 1:723450/137‑1 (MQ=255) cTTATCTTCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTa < 2:211442/140‑1 (MQ=255) cTTATCTTCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTa > 2:1108602/1‑140 (MQ=255) cTTATCTTCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTa < 1:982787/140‑1 (MQ=255) cTTATCTTCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTa < 1:842522/140‑1 (MQ=255) cTTATCTTCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTa < 1:1242689/140‑1 (MQ=255) cTTATCTTCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTa < 2:802941/140‑1 (MQ=255) tATCTTCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACg < 1:209602/140‑1 (MQ=255) aTCTTCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGACTGAGCTGACCGTAAAC‑GCCC‑C‑C‑C‑TTGGCGCTACgg > 2:671480/1‑140 (MQ=255) ttCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGcc < 2:1086933/140‑1 (MQ=255) ccTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTg < 1:833819/140‑1 (MQ=255) tGACGATCAACCGCCTGGTTTCGAACGTCAATTCCCGGCTAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGa > 1:123678/1‑140 (MQ=255) tGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAAGTGACCGTGAAC‑T‑CCGC‑C‑C‑TTGTCGCTACGGGCCTGGa > 1:400157/1‑140 (MQ=255) tGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGa > 2:217348/1‑140 (MQ=255) gATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTa > 2:80397/1‑126 (MQ=255) gATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTa < 1:80397/126‑1 (MQ=255) tCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTAc > 2:331524/1‑140 (MQ=255) aaCCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTAcgc < 1:814670/140‑1 (MQ=255) aCCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTAcgcg < 1:331524/140‑1 (MQ=255) gCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCg > 1:1197657/1‑140 (MQ=255) cTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCt < 2:946462/140‑1 (MQ=255) tGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCtt > 2:1339617/1‑140 (MQ=255) aCGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAAtt > 2:1530588/1‑140 (MQ=255) gTCAATTCCCGGATAAGCTGAATTAAAGCTGTAAAATCGGGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGc < 2:569191/140‑1 (MQ=255) tCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCg > 2:1478959/1‑140 (MQ=255) cAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGa > 1:278546/1‑140 (MQ=255) tCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAat < 1:1339617/140‑1 (MQ=255) ccGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAatat < 1:858703/140‑1 (MQ=255) ccGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAatat < 1:1494455/140‑1 (MQ=255) ccGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAatat < 1:1117155/140‑1 (MQ=255) ggATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATAtct > 1:1181918/1‑140 (MQ=255) ggATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑G‑CCAC‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATAtct < 1:1125879/140‑1 (MQ=255) gATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATAtctc > 2:1519946/1‑140 (MQ=255) aGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTg > 2:1463852/1‑140 (MQ=255) gCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGTCCTGGAGTGTACACGTGGCTTCGGTTAATTGCGAAAATATCTCTTTGa > 2:595966/1‑140 (MQ=255) gAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGatat < 1:1029935/140‑1 (MQ=255) gAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGatat < 2:1203130/140‑1 (MQ=255) aTTAAAGCTGGAAAGTCTCGGAGCCAACCAATGAATGGCTAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCg < 2:465322/140‑1 (MQ=255) aTTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTATTTGCGAAAAGATCTCTTTGATATCg > 1:478527/1‑140 (MQ=255) aTTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGACGCTTCGGTTAATTGCGAAAAAATCTCTTTGATATCg > 1:666945/1‑140 (MQ=255) ttAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATc < 1:5484/138‑1 (MQ=255) ttAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATc > 2:5484/1‑138 (MQ=255) aGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGaa > 1:1426602/1‑140 (MQ=255) gCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGaaa < 2:1197657/140‑1 (MQ=255) gCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGaaa < 1:1108602/140‑1 (MQ=255) cTGGAAAGTCGCGGATCCAACCAATGAATAGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAAt < 1:595966/140‑1 (MQ=255) ggAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAg > 1:1279697/1‑140 (MQ=255) ggAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGCTAATTGCTAAAGTACCTCTTTCATATCGAGGAAATAg > 1:647060/1‑140 (MQ=255) gAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGc < 1:217348/140‑1 (MQ=255) tCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGc > 2:367074/1‑140 (MQ=255) cgcgGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGcc > 1:1227504/1‑140 (MQ=255) cgcgGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGcc < 1:1478959/140‑1 (MQ=255) gcgGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCTAAAATATTTCTGTGTTATCGAGGAAATAGCTTTGccc > 1:397506/1‑140 (MQ=255) gcgGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTAGGTTAATTCCGAAAATATCTCTTTGCTATCGAGGAAATAGCTTTGccc > 2:549123/1‑140 (MQ=255) ggAACCAACCAATGAAGGGCGAAACTGGGGAGTAAACTGACCGTCAACTC‑CC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCtt < 2:669489/140‑1 (MQ=255) caaccaaTGAATGGCGATACTGTGGAGTAAAGTGATCGTTAAC‑G‑CC‑C‑CTC‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCg < 2:478527/140‑1 (MQ=255) caaccaaTGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCg < 2:278546/140‑1 (MQ=255) aaccaaTGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCgg > 2:1358985/1‑140 (MQ=255) aaccaaTGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATGGCGAAAATCTCTGTTTCATATCGAGCAAATAGCTTTGCCCTTCCTCgg > 2:606316/1‑140 (MQ=255) accaaTGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGt < 1:1193643/140‑1 (MQ=255) accaaTGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGt > 2:916958/1‑140 (MQ=255) aatgaatgGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTcag < 2:141381/140‑1 (MQ=255) aatgaatgGCGAAACTCGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTcag < 2:123678/140‑1 (MQ=255) atgaatgGCGAAACTGTGGAGTGAACTGACCTTCAAC‑G‑CC‑CAC‑C‑TTGGAGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTcagc < 2:666945/140‑1 (MQ=255) tgaatgGCGAAACTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTcagca > 1:166111/1‑140 (MQ=255) cGAAACTGGGGAGTAAATTGACTGTCAAC‑G‑CC‑C‑C‑CTTTGCCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTGa < 2:397506/140‑1 (MQ=255) cTGGGGAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTGAACGAt > 1:170795/1‑140 (MQ=255) gAGTAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTGAACGATTAcgg < 2:1181918/140‑1 (MQ=255) tAAACTGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTGAACGATTAcggcgg > 1:1338366/1‑140 (MQ=255) tGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTGAACGATTACGGCGGCGGaa < 1:367074/140‑1 (MQ=255) tGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTGAACGATTACGGCGGCGGaa > 1:788994/1‑140 (MQ=255) tGACCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTGAACGATTAAGGCGGCGGaa < 2:170795/140‑1 (MQ=255) aCCGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTGAACGATTACGGCGGCGGAACa > 1:1454045/1‑140 (MQ=255) ccGTCAAC‑GCCC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTGAACGATTACGGCGGCGGAACAg > 1:829366/1‑140 (MQ=255) | ATCCGCCAGCTTATCTTCCTGACGATCAACCGCCTGGATTCGAACGTCAATTCCCGGATAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAAC‑G‑CC‑C‑C‑C‑TTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTGAACGATTACGGCGGCGGAACAG > NC_000913/2942151‑2942414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |