BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,622,960	(G)_5→6	coding (3769/4236 nt)	rhsB →	rhs element protein RhsB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,622,955	1	.	G	97.8%	623.3 / 4.5	178	coding (3764/4236 nt)	rhsB	rhs element protein RhsB
Reads supporting (aligned to +/- strand): ref base . (2/2); new base G (95/79); total (97/81)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 202 total aligned reads displayed.

TTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATC‑G‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTATTTGCGAAGATAAA  >  NC_000913/3622818‑3623085

    gACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATC‑g‑ggggg                                                                                                                              <  1:1184172/140‑2 (MQ=255)

     aCCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCAGGGTTTACCTACGTTGGAGGAAGCAAAATC‑g‑gggggc                                                                                                                             >  1:667034/1‑138 (MQ=37)

        cGCTGCAGGGGCGATATGTCACCCAGGATCCTATTTGACAGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATC‑g‑gggggcatg                                                                                                                          <  2:603059/140‑6 (MQ=255)

        cGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATC‑g‑gggggcatg                                                                                                                          <  2:1487993/140‑6 (MQ=255)

        cGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATC‑g‑gggggcatg                                                                                                                          >  1:11996/1‑135 (MQ=255)

        cGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATC‑g‑gggggcatg                                                                                                                          <  1:1363817/140‑6 (MQ=255)

          cTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTGTCTGTGTGGGAGGATGCAAAATCGG‑GGGGCATGTa                                                                                                                         >  2:404294/1‑140 (MQ=255)

          cTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTa                                                                                                                         >  2:1040175/1‑140 (MQ=255)

          cTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGAAATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTa                                                                                                                         >  1:1548308/1‑140 (MQ=255)

                gggCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATC‑g‑gggggc                                                                                                                             <  1:252021/129‑3 (MQ=255)

                gggCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATC‑g‑gggggc                                                                                                                             >  2:252021/1‑127 (MQ=255)

                     atatatCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCtt                                                                                                              >  1:1020523/1‑140 (MQ=255)

                     atatatCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATC‑g‑gggggca                                                                                                                            >  2:1100993/1‑122 (MQ=255)

                     atatatCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATC‑g‑gggggca                                                                                                                            <  1:1100993/125‑4 (MQ=255)

                         atCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCg                                                                                                          <  1:269673/140‑1 (MQ=255)

                            aCTCAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGca                                                                                                       >  2:1399929/1‑140 (MQ=255)

                             cTCAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTAACTATGTGGGAGGAAGTAAAATCGG‑GGGGCACGTACGTATGGTCTATGCGGcac                                                                                                      >  2:714250/1‑140 (MQ=38)

                              tCAGGATCCGATTGGTCTGAAGTGGCGATTGAACCTGCATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGcaca                                                                                                     <  1:449037/140‑1 (MQ=255)

                               cAGGATCCGATTGGACTGAAGGTGGGATGGAACCTGTGTGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCacac                                                                                                    <  1:679700/140‑1 (MQ=255)

                               cAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCacac                                                                                                    <  2:1508196/140‑1 (MQ=255)

                                aGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGTAGGATGCAAAATG‑GCGAGGGATGGACTAAATGTGGTTCCGGCACACt                                                                                                   >  1:964241/1‑140 (MQ=255)

                                aGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACt                                                                                                   >  2:1423768/1‑140 (MQ=255)

                                aGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACt                                                                                                   >  1:1252008/1‑140 (MQ=255)

                                aGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGACACACt                                                                                                   >  1:1345366/1‑140 (MQ=255)

                                 ggATCCGATTGGACTCAAGGGGCGACGGACCCTGTATTGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTa                                                                                                  <  1:400804/140‑1 (MQ=255)

                                  gATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGGATGAACTAATGGTATTTGCGGCACACTAt                                                                                                 >  1:550963/1‑140 (MQ=255)

                                  gATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACAAATGTTCTTTGCGGCACACTAt                                                                                                 >  2:494099/1‑140 (MQ=255)

                                   aTCCGATTGGACTGACGGGGGGATGCAACCTGTATGGGTATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATc                                                                                                <  1:463193/140‑1 (MQ=255)

                                   aTCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATc                                                                                                <  2:1318399/140‑1 (MQ=255)

                                    tCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATcc                                                                                               <  2:1165044/140‑1 (MQ=255)

                                     ccGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCg                                                                                              <  2:940068/140‑1 (MQ=255)

                                       gATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCt                                                                                            <  2:152919/140‑1 (MQ=255)

                                          tGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATg                                                                                         >  2:241460/1‑140 (MQ=255)

                                            gACTGAAGGGGGGATGGAACCTGTATGGATATCAATTTAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGAt                                                                                       <  1:590708/140‑1 (MQ=255)

                                            gACTGAAGGGGGGATGGAACCTATATGGATACCAATTGACGCCGATATAAGACATCGTCCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGAt                                                                                       <  2:543860/140‑1 (MQ=255)

                                            gACTGAAGGGGGGATGGAACCAGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTGTCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGAt                                                                                       >  2:304232/1‑140 (MQ=255)

                                                 aaGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCt                                                                                            <  2:212958/130‑1 (MQ=255)

                                                 aaGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCt                                                                                            >  1:212958/1‑130 (MQ=255)

                                                 aaGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGGGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTc                                                                                  >  1:53085/1‑140 (MQ=255)

                                                  aGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCg                                                                                              >  2:42832/1‑127 (MQ=255)

                                                  aGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTcc                                                                                 <  1:903466/140‑1 (MQ=255)

                                                      gggATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCCTGTACTAAGGGTGTTTACGGCACACGATCCTCTATGATAGGTCCAGAt                                                                             >  2:452930/1‑140 (MQ=255)

                                                      gggATGGAACCTGTATGGATATCAATTGAATCCAATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGAt                                                                             >  1:1357935/1‑140 (MQ=255)

                                                           ggAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAAtt                                                                        >  2:1382323/1‑140 (MQ=255)

                                                           ggAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAAtt                                                                        >  1:352854/1‑140 (MQ=255)

                                                             aaCCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTg                                                                      <  2:891577/140‑1 (MQ=255)

                                                             aaCCTGTATGGATATAAATTGACTCCGATCTCAGACACCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTg                                                                      <  1:452930/140‑1 (MQ=255)

                                                              aCCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGa                                                                     >  2:76757/1‑140 (MQ=255)

                                                              aCCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGa                                                                     <  2:1020523/140‑1 (MQ=255)

                                                                cTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGAtt                                                                   <  1:1423768/140‑1 (MQ=255)

                                                                 tGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTc                                                                  >  1:1050014/1‑140 (MQ=255)

                                                                  gTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCt                                                                 <  1:241460/140‑1 (MQ=255)

                                                                    aTGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCtgt                                                               <  1:1548842/140‑3 (MQ=255)

                                                                       gATATCAATTGAATCCGATATCCGACATCGACCCCATGGATTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTataga                                                            <  2:557079/140‑1 (MQ=255)

                                                                       gATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCt                                                                 <  1:1094083/135‑1 (MQ=255)

                                                                       gATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTataga                                                            >  1:171724/1‑140 (MQ=255)

                                                                          atCAATTGAATCCGATATCAGATATCGACTCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTatagatag                                                         <  1:561167/140‑1 (MQ=255)

                                                                           tCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGGACACTATCCGCTATGAAAGGTCCAGGTAAAGTTGATTCTATAGATAGc                                                        >  2:568582/1‑140 (MQ=255)

                                                                           tCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGc                                                        <  1:76757/140‑1 (MQ=255)

                                                                            cAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCa                                                       <  2:171724/140‑1 (MQ=255)

                                                                             aaTTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTg                                                                      <  1:516302/124‑1 (MQ=255)

                                                                             aaTTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGa                                                                     >  1:1221968/1‑125 (MQ=255)

                                                                             aaTTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGa                                                                     <  2:1221968/125‑1 (MQ=255)

                                                                             aaTTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCAc                                                      >  2:1335887/1‑140 (MQ=255)

                                                                             aaTTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCAc                                                      <  1:426904/140‑1 (MQ=255)

                                                                             aaTTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCAc                                                      >  2:1548827/1‑140 (MQ=255)

                                                                             aaTTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATACGTCCAGATAAATTTg                                                                      >  2:516302/1‑124 (MQ=255)

                                                                                     gacagatCAGACATCGACCCCCAGGGTTTATGTATATGGTAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATg                                              <  2:636323/135‑1 (MQ=255)

                                                                                            cAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCa                                                       <  2:978635/124‑1 (MQ=255)

                                                                                                 aTCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTtaaata                                  <  2:823597/140‑1 (MQ=255)

                                                                                                     aCCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTta                                      >  2:144886/1‑132 (MQ=255)

                                                                                                     aCCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTta                                      <  1:144886/132‑1 (MQ=255)

                                                                                                     aCCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTaaataaaat                              >  2:312506/1‑140 (MQ=255)

                                                                                                     aCCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTaaataaaat                              >  1:148399/1‑140 (MQ=255)

                                                                                                     aCCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAAATAGCACCTCATATGACGCCTTaaataaaat                              >  2:671173/1‑140 (MQ=255)

                                                                                                     aCCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATCCTATAGAAAGCACCTCATATGTCGCCTtaaatctgtc                              >  1:636323/1‑135 (MQ=255)

                                                                                                           tGGGTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAg                        >  2:1204011/1‑140 (MQ=255)

                                                                                                             ggTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAGATAAATAGcc                      >  1:1108891/1‑140 (MQ=255)

                                                                                                             ggTTTATCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTCATTCTATAGATAACACCGCATATGAGGCCTTAAATAAAATAAATAGcc                      >  2:658704/1‑140 (MQ=255)

                                                                                                                  aTCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTAATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCt                 >  1:152195/1‑140 (MQ=255)

                                                                                                                   tCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTa                >  1:52263/1‑140 (MQ=255)

                                                                                                                   tCTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTa                <  2:1357935/140‑1 (MQ=255)

                                                                                                                    cTATGTGGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTAt               >  1:803465/1‑140 (MQ=255)

                                                                                                                       tgtgGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTATTTg            >  1:1066224/1‑140 (MQ=255)

                                                                                                                        gtgGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGTGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCGTAAGTAGAATAAAAAGCCAATCTATTTGc           >  1:479575/1‑140 (MQ=255)

                                                                                                                         tgGGAGGATGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTATTTGCg          <  2:53085/140‑1 (MQ=255)

                                                                                                                             aggaTGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCTTTAAATAAAATAAATAGACAATCTATTTGCGAAGa      >  2:590348/1‑140 (MQ=255)

                                                                                                                             aggaTGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTATTTGCg          <  2:867710/136‑1 (MQ=255)

                                                                                                                             aggaTGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTATTTGCg          >  1:867710/1‑136 (MQ=255)

                                                                                                                             aggaTGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTATTTGCGAAGa      >  2:1264542/1‑140 (MQ=255)

                                                                                                                             aggaTGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTATTTGCGAAGa      >  2:1297532/1‑140 (MQ=255)

                                                                                                                             aggaTGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTATTTGCGAAGa      >  1:1131405/1‑140 (MQ=255)

                                                                                                                                 tGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGTGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTATTTGCg          >  2:1088753/1‑132 (MQ=255)

                                                                                                                                 tGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTATTTGCg          >  2:757811/1‑132 (MQ=255)

                                                                                                                                 tGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTATTTGCg          >  1:1264981/1‑132 (MQ=255)

                                                                                                                                 tGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTATTTGCg          <  1:757811/132‑1 (MQ=255)

                                                                                                                                 tGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTATTTGCGAAGATaaa  >  2:774495/1‑140 (MQ=255)

                                                                                                                                 tGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTATTTGCGAAGATaaa  >  1:1380358/1‑140 (MQ=255)

                                                                                                                                 tGCAAAATCGG‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTATTTGCGAAGATaaa  >  2:1331401/1‑140 (MQ=255)

                                                                                                                                 tGCAAAATCGG‑GGGGAATGTACTAAAGGTCTTTGCGGTACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTATTTGCGAAGATaaa  <  1:438826/140‑1 (MQ=255)

TTATGACCCGCTGCAGGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAACCTGTATGGATATCAATTGAATCCGATATCAGACATCGACCCCCTGGGTTTATCTATGTGGGAGGATGCAAAATC‑G‑GGGGCATGTACTAATGGTCTTTGCGGCACACTATCCGCTATGATAGGTCCAGATAAATTTGATTCTATAGATAGCACCGCATATGACGCCTTAAATAAAATAAATAGCCAATCTATTTGCGAAGATAAA  >  NC_000913/3622818‑3623085

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`