BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3363001 =	166 (1.810)	174 (1.920)	73/274	0.1	67.1%	coding (195/2382 nt)	yhcD	putative fimbrial usher protein YhcD
*	?	NC_000913	3766087 =	6 (0.070)	174 (1.920)	73/274	0.1	67.1%	coding (3905/4134 nt)	rhsA	rhs element protein RhsA

Only 100 of 348 total aligned reads displayed.

TGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362866‑3363140

tGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGCTTTTTGCCAGGTGATTATTCACTGATAGTATCAGTaa                                                                                                                                           >  1:583107/1‑140 (MQ=255)

      cctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacattaccaggaggagctatcattgttatatctaagtactgtctc                                                                                                                                     <  2:646083‑M1/11‑8 (MQ=255)

             tacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑aaaaaaa                                                                                                                             <  1:1407698‑M1/18‑1 (MQ=255)

              agaTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGTATATTCAGTGAAAGAATCAGTAAATGGCG‑aaaaaaaa                                                                                                                            >  1:595660/1‑140 (MQ=255)

                gtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAgg                                                                                                                          >  2:1407698‑M1/120‑140 (MQ=255)

                 ttGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGc                                                                                                                         >  1:1312577/1‑140 (MQ=255)

                   gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCTAGGTGAATCTTCGCTGGTAGTATCACTAAAGGGCG‑AAAAAAAAGGCaa                                                                                                                       >  2:515053/1‑140 (MQ=255)

                   gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                       >  1:1004286/1‑140 (MQ=255)

                   gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                       >  2:1201468/1‑140 (MQ=255)

                   gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                       >  2:1332463/1‑140 (MQ=255)

                   acatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                       >  1:79083‑M1/117‑140 (MQ=255)

                   acatctgtcgggtttttccccagcactccaggatctgtcatttattatttcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                       >  2:480284‑M1/117‑140 (MQ=255)

                     cGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATGCACAGATTGTATCAGTCAATGTTG‑AAAAAAAAGGCAAC‑a                                                                                                                    >  2:667343/1‑140 (MQ=255)

                       cTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑Att                                                                                                                  >  1:122549/1‑140 (MQ=255)

                            gggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttctacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAgg                                                                                                                          >  1:1104980‑M1/108‑128 (MQ=255)

                            gggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTAc                                                                                                             <  1:1024372‑M1/33‑1 (MQ=255)

                               tttGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTAcgcg                                                                                                          <  1:768235/140‑1 (MQ=255)

                                 tGATCGGGAAACATTGAAATCAATAAGTGCAGATCCTCATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCt                                                                                                        <  1:399776/140‑1 (MQ=255)

                                        gAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTtgatga                                                                                                 >  1:165224/1‑140 (MQ=255)

                                               cagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGc                                                                                          >  2:1076024‑M1/89‑140 (MQ=255)

                                                    tctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     >  2:1247664‑M1/84‑140 (MQ=255)

                                                       gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGc                                                                                          <  2:1021285‑M1/52‑1 (MQ=255)

                                                       gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                  <  2:1378196‑M1/60‑1 (MQ=255)

                                                         catttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTc                                                                                >  2:1225111‑M1/79‑140 (MQ=255)

                                                         aGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTc                                                                                <  1:868499/140‑1 (MQ=255)

                                                                tatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCa                                                                         <  2:190500‑M1/69‑1 (MQ=255)

                                                                  tgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCC‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAgg                                                                       >  1:892313‑M1/70‑140 (MQ=255)

                                                                   ccTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGc                                                                      >  2:1093744/1‑140 (MQ=255)

                                                                    cTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGc                                                                      <  1:244514/139‑1 (MQ=255)

                                                                    cTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCa                                                                     >  2:1037378/1‑140 (MQ=255)

                                                                      aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAt                                                                    >  2:1452754/1‑140 (MQ=255)

                                                                        tatatCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTc                                                                 >  2:208484/1‑140 (MQ=255)

                                                                        tatatCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTCGATGAAAGTGGGGAGATTTGTTTTGATCAGGCATTTc                                                                 >  1:555599/1‑140 (MQ=255)

                                                                             cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGTAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:544481/1‑140 (MQ=255)

                                                                             cGCATTATTTTTCCCGTTCAGCCCGTTTTTTACCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:227922/1‑140 (MQ=255)

                                                                               cATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAGC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaaca                                                          >  2:248095/1‑140 (MQ=255)

                                                                                 ttattTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAg                                                        >  1:294109/1‑140 (MQ=255)

                                                                                 ttattTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAg                                                        >  2:791182/1‑140 (MQ=255)

                                                                                  tattTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       <  2:337986/140‑1 (MQ=255)

                                                                                  agttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       >  1:1412815‑M1/54‑140 (MQ=255)

                                                                                      tttCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGt                                                   <  2:1027156/140‑1 (MQ=255)

                                                                                       ttCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCgg                                                    >  2:1483412/1‑138 (MQ=255)

                                                                                       ttCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCgg                                                    <  1:1483412/138‑1 (MQ=255)

                                                                                        ccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGttt                                                 <  2:690814‑M1/93‑1 (MQ=255)

                                                                                         cctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTa                                                <  2:1487830‑M1/94‑1 (MQ=255)

                                                                                          ctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaa                                               <  1:1269263‑M1/95‑1 (MQ=255)

                                                                                          ccGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCACGCTTTTCTGTAACAAGCCGGTTTaa                                               >  1:679207/1‑140 (MQ=255)

                                                                                            gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATAAGGAATTTCTGCAACAAGCCGGTTTaaaa                                             <  1:614792‑M1/97‑1 (MQ=255)

                                                                                              tCAGCCCGTTTTTTGCCCGGTGGATATTCACTGATAGTAACAGTAAATCGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           <  2:612365/140‑1 (MQ=255)

                                                                                              tCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           >  2:1152409/1‑140 (MQ=255)

                                                                                              tCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           >  1:947443/1‑140 (MQ=255)

                                                                                              gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           <  1:206699‑M1/99‑1 (MQ=255)

                                                                                              gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           <  2:1283747‑M1/99‑1 (MQ=255)

                                                                                              gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           <  2:1289838‑M1/99‑1 (MQ=255)

                                                                                                   ccGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCtt                                      <  1:1037378/140‑1 (MQ=255)

                                                                                                   caacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCtt                                      >  2:802350‑M1/37‑140 (MQ=255)

                                                                                                   caacatttccacgagaacctatgattgttatctgtgAGTGAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCtt                                      >  2:726749‑M1/37‑140 (MQ=255)

                                                                                                       tttttGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTga                                  >  1:834731/1‑140 (MQ=255)

                                                                                                              cgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAATCCGGTTTAAAAATTCCTTCTGAAGaaaaa                           <  1:699173‑M1/115‑1 (MQ=255)

                                                                                                                  tGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCTTTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATg                       <  2:947443/140‑1 (MQ=255)

                                                                                                                   gAATATTCACTGATACTATCAGTAACTGGTG‑AAAAAAGAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                      <  1:505926/140‑1 (MQ=255)

                                                                                                                    aaTATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGc                     <  2:880368/140‑1 (MQ=255)

                                                                                                                       atcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  1:1195613‑M1/124‑1 (MQ=255)

                                                                                                                         tCACTGATTGTATCAGTAAATGTCG‑AAAAATAAGGCAAC‑GTTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:712961/140‑1 (MQ=255)

                                                                                                                         tCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:904004/140‑1 (MQ=255)

                                                                                                                         tCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:1152409/140‑1 (MQ=255)

                                                                                                                         cattgttatatctaAGTAAATGTCG‑AAAAAACAGGCAAC‑TTTGCTACGAGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:546432‑M1/15‑140 (MQ=255)

                                                                                                                         cattgttatatctaAGTAAATGGCG‑TAAAAAAAGGCAGC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:637162‑M1/15‑140 (MQ=255)

                                                                                                                         cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGTCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:264832‑M1/15‑140 (MQ=255)

                                                                                                                         cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:848318‑M1/15‑140 (MQ=255)

                                                                                                                           aCTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:369191/1‑138 (MQ=255)

                                                                                                                           aCTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:369191/138‑1 (MQ=255)

                                                                                                                           aCTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  1:1019867/1‑140 (MQ=255)

                                                                                                                            tgttatatctaAGTACATGGCG‑TAACAAATGGCAAC‑AATGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             >  1:656386‑M1/12‑140 (MQ=255)

                                                                                                                            tgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             >  1:1487830‑M1/12‑140 (MQ=255)

                                                                                                                            tgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             >  1:1459177‑M1/12‑140 (MQ=255)

                                                                                                                            tgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             <  2:1544455‑M1/129‑1 (MQ=255)

                                                                                                                            tgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             >  1:1289838‑M1/12‑140 (MQ=255)

                                                                                                                            tgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             >  1:1353382‑M1/12‑140 (MQ=255)

                                                                                                                            cTGATAGTATCAGTACATGGCG‑CAACAAATGGCAAC‑ACTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             <  1:715821/140‑1 (MQ=255)

                                                                                                                             tGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  >  1:1497961/1‑134 (MQ=255)

                                                                                                                              ttatatctaGGTAAAGGGCA‑AAGAAAAAGTCAAC‑ATTACTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  1:751155‑M1/10‑140 (MQ=255)

                                                                                                                              ttatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  2:239627‑M1/10‑140 (MQ=255)

                                                                                                                              gATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  1:1079810/133‑1 (MQ=255)

                                                                                                                              gATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  1:1048550/140‑1 (MQ=255)

                                                                                                                              gATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  1:986807/1‑140 (MQ=255)

                                                                                                                              gATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATCTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  1:1255623/140‑1 (MQ=255)

                                                                                                                              gATAGTATCAGTAAATGCCG‑AACAAAAAGGCCAC‑ACTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  2:455078/140‑1 (MQ=255)

                                                                                                                              gATAGTATCAGTAAACGGCG‑AAAAACAAGACAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  1:487419/140‑1 (MQ=255)

                                                                                                                               tatatctaAGTAAATGTCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:595551‑M1/9‑134 (MQ=255)

                                                                                                                               tatatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACta          <  1:797313‑M1/132‑1 (MQ=255)

                                                                                                                               aTAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACta          >  1:1382349/1‑140 (MQ=255)

                                                                                                                                atatctaaGTAAATGGCG‑AAAAAAAA‑GCAACAATTCCAACGCGCTTTGATGAAAATGCCGCCTTTTGTTTTGATAAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCTTTTTGAAGAAAAAAATGGCTGTTCCGCCtat         >  2:168401/8‑140 (MQ=255)

                                                                                                                                atatctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             >  1:182337‑M1/8‑136 (MQ=255)

                                                                                                                                  atctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:1221575‑M1/126‑1 (MQ=255)

                                                                                                                                   tctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      >  1:926211‑M1/5‑140 (MQ=255)

                                                                                                                                   tctaAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATAGCTACGCCCTTTGATGTAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      >  2:396020‑M1/5‑140 (MQ=255)

                                                                                                                                   tATCAGTATATGGCG‑AACAAAATGGCAAC‑AGAGTTTCGCACTTTGATGCAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      <  2:757296/140‑1 (MQ=255)

                                                                                                                                       AGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  2:1421286‑M1/140‑1 (MQ=255)

                                                                                                                                       AGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  2:290819‑M1/140‑1 (MQ=255)

TGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAAC‑ATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362866‑3363140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.