Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,473,773	A→G	N57S (AAC→AGC)	yfdP →	CPS‑53 (KpLE1) prophage; protein YfdP

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,473,773	0	A	G	100.0%	332.6 / NA	93	N57S (AAC→AGC)	yfdP	CPS‑53 (KpLE1) prophage; protein YfdP
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (47/46);  total (47/46)

TATCGGGGAGCTGGACGGCGGCGTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGG  >  NC_000913/2473639‑2473907                                                                                                                                       |                                                                                                                                       tATCGGGGAGCTGGACGGCGGCGTATTCGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAATTCGAACCATTTGATGAGAGCCGTc                                                                                                                                   >  1:1476514/1‑140 (MQ=255)      gggAGCTGGACGGCGGCGTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAGCCTGGAAATCGGACGATTTGATGAGAGCCGTCTGaaa                                                                                                                              >  1:450782/1‑140 (MQ=255)      gggAGCTGGACGGCGGCGTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGaaa                                                                                                                              >  1:320595/1‑140 (MQ=255)        gAGCTGGACGGCGGCGTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAAt                                                                                                                            <  1:825258/140‑1 (MQ=255)        gAGCTGGACGGCGGCGTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAAt                                                                                                                            >  2:1238872/1‑140 (MQ=255)        gAGCTGGACGGCGGCGTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAAt                                                                                                                            >  1:366887/1‑140 (MQ=255)         aGCTGGACGGCGGCGTATTTGATACAAAAATCGGCGCTGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATc                                                                                                                           <  1:436527/140‑1 (MQ=255)          gCTGGACGGCGGCGTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCa                                                                                                                          >  1:1085316/1‑140 (MQ=255)           cTGGACGGCGGCGTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCaa                                                                                                                         >  1:341737/1‑140 (MQ=255)           cTGGACGGCGGCGTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCACTTAATGAGAGCCGTCTGAAAATctg                                                                                                                         >  1:631113/1‑138 (MQ=255)            tGGACGGCGGCGTATCTGAAACCAAAATCCGCGCAGTCCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCaaa                                                                                                                        <  1:405540/140‑1 (MQ=255)            tGGACGGCGGCGTATATGAAACCAACATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCaaa                                                                                                                        <  1:654333/140‑1 (MQ=255)               aCGGCGGCGTATTTGCAACCAAGATCGGCGCAGTTCTTAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAacac                                                                                                                     <  1:722013/140‑1 (MQ=255)               aCGGCGGCGTATTTGAATCCAACATCGGCGCCGTTCTCATTGAAGTCGTTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAacac                                                                                                                     <  2:450782/140‑1 (MQ=255)               aCGGCGGCGTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAacac                                                                                                                     <  2:1085316/140‑1 (MQ=255)               aCGGCGGCGTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAacac                                                                                                                     <  1:1214568/140‑1 (MQ=255)                cggcggCGTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAAcaca                                                                                                                    <  1:1154380/140‑1 (MQ=255)                cggcggCGTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAAcaca                                                                                                                    <  2:783376/140‑1 (MQ=255)                 ggcggcGTATTTGAATCCAAAATCGCCGCGGTTCTCAATGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACaa                                                                                                                   <  1:553282/140‑1 (MQ=255)                 ggcggcGTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACaa                                                                                                                   <  2:341737/140‑1 (MQ=255)                 ggcggcGTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACaa                                                                                                                   <  2:320595/140‑1 (MQ=255)                 ggcggcGTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAAACGAACCAATTGATGAGAGCCGGCTGAAAATCAAACACaa                                                                                                                   >  2:525603/1‑140 (MQ=255)                  gcggcgTATTTGAAACCAAAATAGGAGCATTTCTCAGCGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACaaa                                                                                                                  <  1:525603/140‑1 (MQ=255)                   cggcgTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAAc                                                                                                                 >  2:1188425/1‑140 (MQ=255)                    ggcgTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAAct                                                                                                                <  2:1403063/140‑1 (MQ=255)                    ggcgTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAAct                                                                                                                <  1:1188425/140‑1 (MQ=255)                       gTATTTGAAACCAAAATCGGCGGAGTTCTCAATGAAGTCGCTTCCGGTCTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACtctc                                                                                                             <  2:522861/140‑1 (MQ=255)                        tATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCa                                                                                                            >  2:166247/1‑140 (MQ=255)                                aCCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCg                                                                                                    <  1:153074/140‑1 (MQ=255)                                 ccAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGc                                                                                                   <  2:1124267/140‑1 (MQ=255)                                     aaTCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGa                                                                                               >  1:1217913/1‑140 (MQ=255)                                                     aGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAAt                                                                               >  1:1345086/1‑140 (MQ=255)                                                     aGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAAt                                                                               >  2:1091167/1‑140 (MQ=255)                                                     aGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAAt                                                                               >  1:889797/1‑140 (MQ=255)                                                       tGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAGCCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAAttt                                                                             <  2:1240073/140‑1 (MQ=255)                                                         aaGTCGCTTCCGGTGTGATGAACACGAAAAATAGACGTACGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTcc                                                                           <  2:721278/140‑1 (MQ=255)                                                          aGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCg                                                                          >  1:65329/1‑140 (MQ=255)                                                          aGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCg                                                                          <  2:65329/140‑1 (MQ=255)                                                            tCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCgaa                                                                        >  2:1204771/1‑140 (MQ=255)                                                            tCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCgaa                                                                        >  2:319326/1‑140 (MQ=255)                                                            tCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCgaa                                                                        <  2:32240/140‑1 (MQ=255)                                                            tCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCgaa                                                                        <  1:960575/140‑1 (MQ=255)                                                            tCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCg                                                                          >  1:1037995/1‑138 (MQ=255)                                                            tCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCg                                                                          <  2:1037995/138‑1 (MQ=255)                                                               cTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCgaagaa                                                                     >  2:1325494/1‑140 (MQ=255)                                                                          atgaACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATGTGTTCGCCAGACAAACGGTGGGAAACTTTCCGAAGAAGACACCACCGa                                                          >  2:571984/1‑140 (MQ=255)                                                                          atgaACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGa                                                          >  1:827235/1‑140 (MQ=255)                                                                          atgaACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGa                                                          >  2:129212/1‑140 (MQ=255)                                                                          atgaACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGa                                                          <  2:1476514/140‑1 (MQ=255)                                                                          atgaACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGa                                                          >  1:91237/1‑140 (MQ=255)                                                                              acacGAAAACCAAAGGTCAGGTTTCACTCAATCTGGAAATCGAACCATATGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACg                                                      <  2:635343/140‑1 (MQ=255)                                                                              acacGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACg                                                      <  1:166247/140‑1 (MQ=255)                                                                               cacGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTGACCGTGGAAAAATTTCCGAAGCAGACACCACCGAAACGc                                                     >  2:579210/1‑140 (MQ=255)                                                                               cacGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGc                                                     <  1:19718/140‑1 (MQ=255)                                                                               cacGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGc                                                     >  2:1380429/1‑140 (MQ=255)                                                                               cacGAAAACCAAAGGCAAGGTCTCACTCATCCTGGAACTCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGc                                                     <  1:478450/140‑1 (MQ=255)                                                                                  gAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGa                                                  <  2:1083369/140‑1 (MQ=255)                                                                                   aaaaCCAAAGGTAAGTTCTCACGCATCCTGGAAATCGTACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCATGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGat                                                 <  1:589219/140‑1 (MQ=255)                                                                                    aaaCCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACg                                                      <  2:1179204/134‑1 (MQ=255)                                                                                    aaaCCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACg                                                      >  1:1179204/1‑134 (MQ=255)                                                                                       ccAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGat                                                 >  1:1542262/1‑136 (MQ=255)                                                                                       ccAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGat                                                 <  2:1542262/136‑1 (MQ=255)                                                                                                   tctcACTCAACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCggt                                 <  1:1238872/140‑1 (MQ=255)                                                                                                      cactcaACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCggtggt                              <  2:366887/140‑1 (MQ=255)                                                                                                      cactcaACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCggtggt                              <  1:129212/140‑1 (MQ=255)                                                                                                      cactcaACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCggtggt                              >  2:1052834/1‑140 (MQ=255)                                                                                                      cactcaACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACACCGATGTATGTCAATCGCggtggt                              <  2:889797/140‑1 (MQ=255)                                                                                                       actcaACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTc                             >  2:192470/1‑140 (MQ=255)                                                                                                       actcaACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTc                             >  2:1411193/1‑140 (MQ=255)                                                                                                       actcaACCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTGCCGAAGAAGACAGCACGGAAACGCCGATGTCTGTCAATCGCGGTGGTc                             >  2:413778/1‑140 (MQ=255)                                                                                                           aaCCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCA‑ATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCAACGAAACGCCGAGGTTTGTCAAACGCGGTGGTCGCCTg                        >  1:685764/1‑140 (MQ=255)                                                                                                            aCCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGCCTg                        >  2:1195436/1‑140 (MQ=255)                                                                                                            aCCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGCCTg                        >  2:1151512/1‑140 (MQ=255)                                                                                                            aCCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGCCTg                        >  2:334954/1‑140 (MQ=255)                                                                                                            aCCTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGCCTg                        >  2:1252541/1‑140 (MQ=255)                                                                                                             ccTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAATTTTCCGAAAAAGACACCGCCGTAACGCCGATGTAAGTCAATCGCGGTGGTCGCCTGa                       >  2:571099/1‑140 (MQ=255)                                                                                                             ccTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACGGAAACGCAGATGTAAGTCAATAGCGGTGGTCGCCTGa                       >  1:443019/1‑140 (MQ=255)                                                                                                             ccTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGCCTGa                       <  1:1325494/140‑1 (MQ=255)                                                                                                             ccTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGCCTGa                       >  2:344008/1‑140 (MQ=255)                                                                                                             ccTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGCCTGa                       <  1:1411193/140‑1 (MQ=255)                                                                                                             ccTGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAAAAGACACCGCCGAAACGCCGATGTAGGTCAATCGCGGTGGTCGCCTGa                       >  2:407496/1‑140 (MQ=255)                                                                                                               tGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGGAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGc                           <  1:1472673/134‑1 (MQ=255)                                                                                                               tGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGGAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGc                           >  2:1472673/1‑134 (MQ=255)                                                                                                               tGGAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGCCTGACt                     >  1:254272/1‑140 (MQ=255)                                                                                                                 gAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAATCGCCGATGTATATCAATCGCGATGGTCGCCTGACTAt                   >  1:395387/1‑140 (MQ=255)                                                                                                                 gAAATCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGCCTGACTAt                   >  1:811353/1‑140 (MQ=255)                                                                                                                     tCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCg                            <  1:1430328/127‑1 (MQ=255)                                                                                                                     tCGAACCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCg                            >  2:1430328/1‑127 (MQ=255)                                                                                                                        aaCCATTTGATGAGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCAATGGAGGGCAATCGCGGTGGTGTCCTGACTATTCTGCAg            >  2:687592/1‑140 (MQ=255)                                                                                                                                gatgaGAGCCGTCTGCAAATCACACGCAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGCCTGGCTATTCTGCAGGAAGACCa    <  1:687592/140‑1 (MQ=255)                                                                                                                                gatgaGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCa    <  2:228584/140‑1 (MQ=255)                                                                                                                                  tgaGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAgg  <  1:1252541/140‑1 (MQ=255)                                                                                                                                  tgaGAGCCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAgg  <  1:1195436/140‑1 (MQ=255)                                                                                                                                       |                                                                                                                                       TATCGGGGAGCTGGACGGCGGCGTATTTGAAACCAAAATCGGCGCAGTTCTCAGTGAAGTCGCTTCCGGTGTGATGAACACGAAAACCAAAGGTAAGGTCTCACTCAACCTGGAAATCGAACCATTTGATGAGAACCGTCTGAAAATCAAACACAAACTCTCATATGTTCGCCCGACTAACCGTGGGAAAATTTCCGAAGAAGACACCACCGAAACGCCGATGTATGTCAATCGCGGTGGTCGCCTGACTATTCTGCAGGAAGACCAGG  >  NC_000913/2473639‑2473907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑