BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,482,011	T→C	T56A (ACC→GCC)	emrY ←	tripartite efflux pump membrane subunit EmrY

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,482,011	0	T	C	100.0%	379.6 / NA	111	T56A (ACC→GCC)	emrY	tripartite efflux pump membrane subunit EmrY
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (56/55); total (56/55)

Only 100 of 113 total aligned reads displayed.

CTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGTGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACGCACCATAACGTCCCACCGGTTAA  >  NC_000913/2481875‑2482146

cTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGcc                                                                                                                                      <  1:843056/140‑1 (MQ=255)

 tACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCt                                                                                                                                     >  1:1433271/1‑140 (MQ=255)

   cacaTTAATGAAGACTGCGAAACAACAGTTACTGAAACTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTc                                                                                                                                   <  1:397607/140‑1 (MQ=255)

     caTTAATGAAGACAGCGAAAAAAAAGTGACTTAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGt                                                                                                                                 <  2:1512244/140‑1 (MQ=255)

      aTTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGTAATGGCATCTGCGATAATAAACGAGGTGATACCCCAGGCGCCTTCGTc                                                                                                                                >  2:750119/1‑140 (MQ=255)

      aTTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTc                                                                                                                                >  1:313529/1‑140 (MQ=255)

        tAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATATTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTg                                                                                                                              >  1:999419/1‑140 (MQ=255)

          aTGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGtt                                                                                                                            >  1:1367855/1‑140 (MQ=255)

           tGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTg                                                                                                                           >  1:906895/1‑140 (MQ=255)

            gAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGa                                                                                                                          <  2:1367855/140‑1 (MQ=255)

             aaGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACCCCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGAt                                                                                                                         >  2:651127/1‑140 (MQ=255)

             aaGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGAt                                                                                                                         >  2:1070856/1‑140 (MQ=255)

             aaGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAAACCAGGCGCCTTCGTCTGTTGAt                                                                                                                         >  1:631891/1‑140 (MQ=255)

                  aGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTATCAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTcc                                                                                                                    >  1:1360599/1‑140 (MQ=255)

                  aGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTcc                                                                                                                    >  2:1371496/1‑140 (MQ=255)

                  aGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTcc                                                                                                                    >  1:1529052/1‑140 (MQ=255)

                  aGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCACCTTCGTCTGTTGATGCTcc                                                                                                                    >  1:1335275/1‑140 (MQ=255)

                  aGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCAAGGCGCCTTCGTCTGTTGATGCTcc                                                                                                                    >  1:570389/1‑140 (MQ=255)

                  aGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACAAGGTGATGACCGAGACGCCTTAGTCTGTTGATGCTcc                                                                                                                    >  1:402704/1‑140 (MQ=255)

                  aGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGAAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTAGTCTGTTGATGCTcc                                                                                                                    >  1:663078/1‑140 (MQ=255)

                    cGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCa                                                                                                                  >  1:1463615/1‑140 (MQ=255)

                    cGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCa                                                                                                                  >  1:875570/1‑140 (MQ=255)

                    cGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCACGCGCCTTCGTCTGTTGATGCTCCCa                                                                                                                  >  1:1315872/1‑140 (MQ=255)

                    cGAAAAAAAAGTGACGGAAAGTCAAAATACTCTTAATACGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCa                                                                                                                  <  1:742484/140‑1 (MQ=255)

                     gAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAg                                                                                                                 >  2:1385951/1‑140 (MQ=255)

                      aaaaaaaaGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCATCCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGa                                                                                                                <  2:208625/140‑1 (MQ=255)

                        aaaaaaGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGaaa                                                                                                              <  2:1086106/140‑1 (MQ=255)

                        aaaaaaGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGaaa                                                                                                              <  2:1064911/140‑1 (MQ=255)

                        aaaaaaGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGaaa                                                                                                              <  2:875570/140‑1 (MQ=255)

                             aGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAg                                                                                                         <  1:890979/140‑1 (MQ=255)

                              gTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGa                                                                                                        >  2:1441421/1‑140 (MQ=255)

                               tGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGat                                                                                                       <  1:999028/140‑1 (MQ=255)

                                 aCTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGatat                                                                                                     <  2:1492995/140‑1 (MQ=255)

                                    gAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGt                                                                                                  <  1:1385951/140‑1 (MQ=255)

                                              ataatCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCg                                                                                        <  2:906895/140‑1 (MQ=255)

                                              ataatCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCg                                                                                        <  2:185157/140‑1 (MQ=255)

                                              ataatCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCg                                                                                        <  2:1317353/140‑1 (MQ=255)

                                                   cTTAATTCGCCTATTATTTGTGGCAGCCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGtt                                                                                   <  1:655212/140‑1 (MQ=255)

                                                     tAATTCGCCTATTCTTTGTGCCAGCCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAg                                                                                 <  1:134092/140‑1 (MQ=255)

                                                     tAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAg                                                                                 >  2:330952/1‑140 (MQ=255)

                                                      aaTTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGa                                                                                >  1:1116049/1‑140 (MQ=255)

                                                       aTTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGaa                                                                               >  1:1467544/1‑140 (MQ=255)

                                                           gCCTATTCTTTGTGCAATCCTGCCAGTAACAGGGAACGCGATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAg                                                                           <  2:708104/140‑1 (MQ=255)

                                                                   tttGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATcc                                                                   >  2:231773/1‑140 (MQ=255)

                                                                     tgtgCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCaa                                                                 >  1:779439/1‑140 (MQ=255)

                                                                     tgtgCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGGATTGCGGCGTTAGGAATAGTGGAATCCaa                                                                 >  1:393251/1‑140 (MQ=255)

                                                                     tgtgCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAAAAAGCCAGATATAGTCAGTATTGCGACGTTGGAAATAGTGGAATCCaa                                                                 >  2:625546/1‑140 (MQ=255)

                                                                          cAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTTTCGTTATGGCGACGTTCGAAAGAGTGGAATCCAACAttt                                                            >  2:553033/1‑140 (MQ=255)

                                                                          cAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGt                                                                          >  1:1353316/1‑126 (MQ=255)

                                                                          cAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGt                                                                          <  2:1353316/126‑1 (MQ=255)

                                                                           aaCCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTg                                                           >  1:1340933/1‑140 (MQ=255)

                                                                                 ccAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATACTGTCGGTAATGCCACGATAGTAATATTGGATTCCAACATTTGCATaaa                                                     >  2:554103/1‑140 (MQ=255)

                                                                                   aGTAACAGGGATCGCATGGGCACTTGCTACCGCCAGCGAAGTGATAACACAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATg                                                   <  2:725971/140‑1 (MQ=255)

                                                                                   aGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATg                                                   <  2:1116049/140‑1 (MQ=255)

                                                                                   aGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCACGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATg                                                   <  2:1315872/140‑1 (MQ=255)

                                                                                        cAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCt                                              >  1:1206142/1‑140 (MQ=255)

                                                                                        cAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCt                                              <  2:1467544/140‑1 (MQ=255)

                                                                                        cAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCt                                              <  2:1433271/140‑1 (MQ=255)

                                                                                        cAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCt                                              <  2:1335275/140‑1 (MQ=255)

                                                                                        cAGGGATCGCAATGGCATTTGCCACACCAAAAGAGCTGACAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCt                                              <  2:570389/140‑1 (MQ=255)

                                                                                           ggATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAAt                                           >  1:1522152/1‑140 (MQ=255)

                                                                                           ggATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAAt                                           >  2:851274/1‑140 (MQ=255)

                                                                                           ggATCGCAATGGCATGTGCTACACCGAACTAGGTGATGACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAAt                                           <  1:651127/140‑1 (MQ=255)

                                                                                             aTCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGa                                         <  2:779439/140‑1 (MQ=255)

                                                                                             aTCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGa                                         <  2:1412226/140‑1 (MQ=255)

                                                                                             aTCGCAATGGCATTTGCTACACCAAACGAGGGGATCACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGa                                         <  2:499606/140‑1 (MQ=255)

                                                                                             aTCGCAATGGCATTTGCCACACTAAACGAGGCGATAACCCAGGCGCCTCCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGa                                         <  2:402704/140‑1 (MQ=255)

                                                                                               cGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTa                                             >  1:1192416/1‑134 (MQ=255)

                                                                                               cGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTa                                             <  2:1192416/134‑1 (MQ=255)

                                                                                                 cAATGGCATTTGCTAAACCAAATGACGTGCTAACCCACGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAAt                                     <  1:554103/140‑1 (MQ=255)

                                                                                                 cAATGGCATTTGCTAAACCAAATGAAGTGTTAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAAt                                     <  1:750119/140‑1 (MQ=255)

                                                                                                    tGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCt                                              >  1:1520200/1‑128 (MQ=255)

                                                                                                    tGGCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCt                                              <  2:1520200/128‑1 (MQ=255)

                                                                                                      gCATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAAACCAACATTTGCCTACATGTCGCTAATGACAATGCAAt                                >  1:569615/1‑140 (MQ=255)

                                                                                                       cATTTGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGACATAGTGGAATCCTACAGTTGCATAAATGTCACTAATGACAATGCAATa                               >  2:566121/1‑140 (MQ=255)

                                                                                                         tttGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGt                             >  1:322574/1‑140 (MQ=255)

                                                                                                           tGCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGa                           <  2:313529/140‑1 (MQ=255)

                                                                                                            gCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGAc                          <  2:322574/140‑1 (MQ=255)

                                                                                                            gCTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATATCACTAATGTCAATGCAATAGTGAc                          >  1:722649/1‑140 (MQ=255)

                                                                                                             cTACACCAAACGAGGTGTTAACCCAGGCGCCTTCGCCTGCTGATGCTCACAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACg                         <  2:393251/140‑1 (MQ=255)

                                                                                                             cTACACCAAACGAGGTGATAACTCAGGCGGCTTCGTCCGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACg                         <  1:553033/140‑1 (MQ=255)

                                                                                                             cTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACg                         <  1:1070856/140‑1 (MQ=255)

                                                                                                             cTACACCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACg                         <  1:1096659/140‑1 (MQ=255)

                                                                                                                cacCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAg                              >  1:1085706/1‑132 (MQ=255)

                                                                                                                cacCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAg                              <  2:1085706/132‑1 (MQ=255)

                                                                                                                cacCAAACGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACGCAc                      >  2:1276618/1‑140 (MQ=255)

                                                                                                                     aaCGAGGTGATAACCTAGGCGCCTTCGTCCGTTGATGATCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACGCACCATaa                 <  1:481976/140‑1 (MQ=255)

                                                                                                                     aaCGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTGGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACGCACCATaa                 >  2:1366649/1‑140 (MQ=255)

                                                                                                                     aaCGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACGCACCATaa                 >  2:316298/1‑140 (MQ=255)

                                                                                                                     aaCGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACGCACCATaa                 >  2:1049717/1‑140 (MQ=255)

                                                                                                                     aaCGAGGTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACGCACCATaa                 >  2:150285/1‑140 (MQ=255)

                                                                                                                          ggTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACGCACCATAACGTcc            <  1:231773/140‑1 (MQ=255)

                                                                                                                          ggTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACGCACCATAACGTcc            >  1:1158931/1‑140 (MQ=255)

                                                                                                                          ggTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACGCACCATAACGTcc            <  2:1529052/140‑1 (MQ=255)

                                                                                                                          ggTGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTAGCTAATGGCAAGGCGATAGTGACGCACCATAACGTcc            >  1:457157/1‑140 (MQ=255)

                                                                                                                            tGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACGCACCATAACGTCCCa          <  1:150285/140‑1 (MQ=255)

                                                                                                                            tGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACGCACCATAACGTCCCa          <  2:1522152/140‑1 (MQ=255)

                                                                                                                            tGATAACCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACGCACCATAACGTCCCa          <  2:1206142/140‑1 (MQ=255)

                                                                                                                                aaCCCAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACGCACCATAACGTCCCACCgg      >  2:1392983/1‑140 (MQ=255)

                                                                                                                                    cAGGCGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACGCACCATAACGTCCCACCGGTTaa  <  1:1049717/140‑1 (MQ=255)

CTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGTAACAGGGATCGCAATGGCATTTGCTACACCAAACGAGGTGATAACCCAGGTGCCTTCGTCTGTTGATGCTCCCAGAAAGCCAGATATTGTCGGTATTGCGACGTTAGAAATAGTGGAATCCAACATTTGCATAAATGTCGCTAATGACAATGCAATAGTGACGCACCATAACGTCCCACCGGTTAA  >  NC_000913/2481875‑2482146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`