| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,793,078 | T→C | V115A (GTG→GCG) | gabT → | 4‑aminobutyrate aminotransferase GabT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,793,078 | 0 | T | C | 98.3% | 192.5 / NA | 59 | V115A (GTG→GCG) | gabT | 4‑aminobutyrate aminotransferase GabT |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (34/24); minor base A (1/0); total (35/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGTGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGCGCTGACCGGCAAGGTGAATCCGTACTCTGCG > NC_000913/2792941‑2793205 | gTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGcggcgg > 2:127737/1‑140 (MQ=255) aaaCTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAAcgc < 1:1301419/140‑1 (MQ=255) tGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTa > 1:1060022/1‑140 (MQ=255) acCTGCTTCCAGGTGCTGGCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGc > 1:151962/1‑140 (MQ=255) ccAGGTGCTGGCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGcgccg < 2:1507392/140‑1 (MQ=255) cTGGCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGTCGGAAAAGGCGTTAGAAATCGACCGCGCCGCCACCaa > 1:430241/1‑140 (MQ=255) cTGGCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAAAGCGTTAAAAATCGGCCGCGCCGCCACCaa > 1:690727/1‑140 (MQ=255) tGGCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGAGGAAAACACGGGAAAAATCGCACGCGCCGCCACCaaa > 1:511029/1‑140 (MQ=255) gCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGGATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGccacc < 1:80797/135‑1 (MQ=255) gCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGGATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGccacc > 2:80797/1‑135 (MQ=255) agaTCTGGAGCTGTGCGCGATTGTGAATCAGAAGGGGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCa < 2:622299/138‑1 (MQ=255) tATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCAt > 2:868971/1‑140 (MQ=255) gtgCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTGCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAgcg < 2:300398/140‑1 (MQ=255) tgCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAATAATCGCCCGCGCAGCCCCCAAACGTAGCGGGACCATCGCTTTTAgcgg > 2:574011/1‑140 (MQ=255) tgCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAGAATCGCCCACGCGGCCGCCAAACGTGGCGGGACCATCGCTTTTAgcgg > 2:426859/1‑140 (MQ=255) tgCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAACAATCGCCCACGCTGCCTCCAAACGTGGCGGAACCATCGCTTTTAgcgg > 2:399307/1‑140 (MQ=255) tgCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCTGCCCCCAAACGTAGCGGCACCATCGCTTTTAgcgg > 2:504151/1‑140 (MQ=255) tgCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAgcgg > 2:329505/1‑140 (MQ=255) tgCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAgcgg > 1:1209186/1‑140 (MQ=255) tgCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAAAGTGGCGGCAACATCGCTTTTAgcct > 1:622299/1‑138 (MQ=255) tgCGAGATTATGAATCAGAAGGAGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAgtgg > 2:364291/1‑140 (MQ=255) gaTTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCAACCAAACGTAGAGGAACCATCTCTTTTAGCGGCGCGt > 1:487844/1‑140 (MQ=255) tGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCAc > 1:1529965/1‑140 (MQ=255) tGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCAc > 2:385324/1‑140 (MQ=255) tCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGgc < 2:1200034/140‑1 (MQ=255) cAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGgcg < 1:1326963/140‑1 (MQ=255) cAGAAGGCGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGgcg > 2:14391/1‑140 (MQ=255) aGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGgcgc > 2:1467105/1‑140 (MQ=255) aaGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCGTCGCTTTTAgcgg > 1:75401/1‑122 (MQ=255) aaGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCGTCGCTTTTAgcgg < 2:75401/122‑1 (MQ=255) aaGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGcgcac < 2:1060022/140‑1 (MQ=255) aaGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGCATCACGGGcgcac > 2:213979/1‑140 (MQ=255) aGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGcgcaca < 2:105681/140‑2 (MQ=255) tGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGcgcacg < 1:1055171/137‑1 (MQ=255) tGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGcgcacg > 2:1055171/1‑137 (MQ=255) tGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCAt > 1:25559/1‑140 (MQ=255) ccGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTa > 1:150205/1‑140 (MQ=255) ccGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTa < 1:329505/140‑1 (MQ=255) ccGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTa < 2:304918/140‑1 (MQ=255) cGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTac > 2:60904/1‑140 (MQ=255) gATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCt > 2:63312/1‑140 (MQ=255) aTTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTg > 1:1489240/1‑140 (MQ=255) tttCGCCAAGAAAACCCTGCTGTTTCCGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTgg < 1:399307/140‑1 (MQ=255) gCCAAGAAAACGCTGCTGGTTACGCACGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGCGCt < 1:14391/140‑1 (MQ=255) aaaaCGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGCGCTGACCgg > 2:874579/1‑140 (MQ=255) aaaaCGCTGCTGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGCGCTGACCgg < 2:1209186/140‑1 (MQ=255) gctgctGGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGCGCTGACCGGCAAgg < 2:25559/140‑1 (MQ=255) cctgctgGTTACGACTGGTTCCTAATCGGGGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGCGCTGACCGGCAAgg < 1:730033/139‑1 (MQ=255) ctgctgGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGCGCTGACCGGCAAGGt < 1:211479/140‑1 (MQ=255) tgctgGTTACGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGCGCTGACCGGCAAGGTg < 2:150205/140‑1 (MQ=255) tgctgGTTACGACCGGTACCGACGCGGCGGATAACCCGGCAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGTGCTGACCGGCAAGGTg < 2:511029/140‑1 (MQ=255) tgctgGTTACGACCGCTTCCGACGCCGCGTAAAACGCCGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGCGCTGACCGGCAAGGTg < 1:426859/140‑1 (MQ=255) ttACGACCGGTTCCGAAGCGGCTGAAAACGCTGTAAAAACCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGCGCTGACCGGCAAGGTGAATCCg < 2:487844/140‑1 (MQ=255) aCGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGCGCTGACCGGCAAGGTg > 1:267010/1‑132 (MQ=255) aCGACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGCGCTGACCGGCAAGGTg < 2:267010/132‑1 (MQ=255) gACCGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGCGCTGACCGGCAAGGTGAATCCGTAct > 1:1348634/1‑140 (MQ=255) ccGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGCGCTGACCGGCAAGGTg > 2:1252761/1‑128 (MQ=255) ccGGTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGCGCTGACCGGCAAGGTg < 1:1252761/128‑1 (MQ=255) gTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGGACGCATTAGACGCTAGCGCTGACCGTCAAGTAGAATCCGGACTCTGCg > 2:716372/1‑140 (MQ=255) gTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGCGCTGACCGGCAAGGTGAATCCGTACTCTGCg > 1:201179/1‑140 (MQ=255) gTTCCGAAGCGGCGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGCGCTGACCCGCCAGGGGAATCCGTACTCTGCg > 2:236382/1‑140 (MQ=255) | GTTGAAAAAACTGTCGCACACCTGCTTCCAGGTGCTGGCTTACGAGCCGTATCTGGAGCTGTGCGAGATTATGAATCAGAAGGTGCCGGGCGATTTCGCCAAGAAAACGCTGCTGGTTACGACCGGTTCCGAAGCGGTGGAAAACGCGGTAAAAATCGCCCGCGCCGCCACCAAACGTAGCGGCACCATCGCTTTTAGCGGCGCGTATCACGGGCGCACGCATTACACGCTGGCGCTGACCGGCAAGGTGAATCCGTACTCTGCG > NC_000913/2792941‑2793205 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |