| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 564,661 | C→A | intergenic (‑181/‑62) | fimZ ← / → argU | putative LuxR family transcriptional regulator FimZ/tRNA‑Arg |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 564,661 | 0 | C | A | 98.8% | 282.7 / NA | 84 | intergenic (‑181/‑62) | fimZ/argU | putative LuxR family transcriptional regulator FimZ/tRNA‑Arg |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (27/56); total (27/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAAATTGTACTTTGATACATGAAAATACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCG > NC_000913/564524‑564796 | gAAATTGTACTTTGACACATGAAAATACGAGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACa < 1:537455/140‑1 (MQ=255) aaaTTGTACTTTGATCCATGAATATTCGGTTTTTCTTTATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACAt < 1:451628/140‑1 (MQ=255) aaaTTGTACTTTGATACATGAACATACGGGTCTTCCTGAATTAGACGCCCAGCGGTGTGCGTTTGTTCGCCGCTATAGGGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACAt < 2:407971/140‑1 (MQ=255) aaaTTGTACTTTGATACATG‑AAATACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACAtt < 2:391646/140‑1 (MQ=255) ttGTACTTTGATACATGAAAATACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGa < 2:1030760/140‑1 (MQ=255) ttGTACTTTGATACATGAAAATACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGa < 1:232116/140‑1 (MQ=255) tGTACTTTGATACATGAAAATACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCTGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGAc < 1:365557/140‑1 (MQ=255) tGTACTTTGATACATGAAAATACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGAc < 1:1044708/140‑1 (MQ=255) tGTACTTTGATACATGAAAATACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGAc < 1:989295/140‑1 (MQ=255) tGTACTTTGATACATGAAAATACGGGTTTTCTTGATTCAGACGCGAAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGAc < 1:244017/140‑1 (MQ=255) tGTACTTTGATACATCAAAATACGGCTTTTCTTGATTGAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGAc < 1:648406/140‑1 (MQ=255) cTTTGATACATGAAAATACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAg < 2:265648/140‑1 (MQ=255) cTTTGATACATGAAAATACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAg < 1:261233/140‑1 (MQ=255) cTTTGATACATGAAAATACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAg < 1:1281265/140‑1 (MQ=255) tttGATACATGAAAATACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGc < 2:295649/140‑1 (MQ=255) tttGATACATGAAAATACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGCTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGc < 2:976706/140‑1 (MQ=255) aTACATGAAAATACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAgg > 2:155860/1‑140 (MQ=255) aTACATGAAAATACGGGTTTTCTTGATTCAGACGCGCAGAGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAgg > 2:169617/1‑140 (MQ=255) aCATGAAAATACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGt < 2:336282/140‑1 (MQ=255) aCATGAAAATACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGt < 1:1096144/140‑1 (MQ=255) aTGAAAATACGGGTTATCTTGACTCTGACCCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTg < 1:713607/140‑1 (MQ=255) tGAAAATACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGa < 2:288344/140‑1 (MQ=255) tGAAAATACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTCCACTTGTTAAGCAACCACATCAAAAGACATCCACTCAGCAAGGGTTGa > 2:743547/1‑140 (MQ=255) aTACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTGGTTCAGCAACCAGATCAAAAGACATAGACTAAGCAAGGGTTGACCGta > 2:645980/1‑140 (MQ=255) ggTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAAtt < 2:98522/140‑1 (MQ=255) ggTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAAtt < 1:1126544/140‑1 (MQ=255) gTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTc > 1:1206576/1‑140 (MQ=255) ttttCTTGATTCAGACGGGCAGCGGTGTGCGGTTGTTTGGCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCa < 2:611538/140‑1 (MQ=255) ttCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCAcg < 2:1389622/140‑1 (MQ=255) ttCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCAcg > 1:293404/1‑140 (MQ=255) tCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCAcgc > 2:1275438/1‑140 (MQ=255) aTTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTa < 1:52078/140‑1 (MQ=255) ttCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTac > 1:933988/1‑140 (MQ=255) aGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAACAGACATTGCCTCAGTAAGGGTTGACCGTATAATTCACGCGATTACAcc > 2:718113/1‑140 (MQ=255) gACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCg > 2:1131098/1‑140 (MQ=255) caggcgcAGCGGTGTTCGTTTGATTTCCGCTATAGCGGAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCg < 1:749612/137‑1 (MQ=255) gcAGCGGTTTGCGTTTGTTTGCTGCTATAGCAAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTg < 2:723915/140‑1 (MQ=255) gcAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTg > 2:1445995/1‑140 (MQ=255) agacaggTGTGCGTTCGTTTGCTGCCATACCGAAATACATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTg < 1:396844/135‑1 (MQ=255) tgCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGGAAGGGTTGACCGGATAAGTCACGCGATTACATCGCATTGTGGTATctg > 2:749612/1‑138 (MQ=255) gCGTTTGTTT‑CCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAAcg < 2:781422/140‑1 (MQ=255) gCGTTTGTTT‑CCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAAcg < 2:1366460/140‑1 (MQ=255) cGTTTGTTTGCCGCTATAGCGACATAAATCACAAACTCACACGCGGTCCTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAAcg < 2:482925/140‑1 (MQ=255) gtttgtttGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAAcgc < 2:259876/140‑1 (MQ=255) ttgtttgCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACgcgc > 2:790388/1‑140 (MQ=255) tgtttgCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGcc > 1:237146/1‑140 (MQ=255) gtttgCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGccc > 1:765452/1‑140 (MQ=255) tttgCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCt > 2:72133/1‑140 (MQ=255) tttgCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGCTAACCGTATAATTCACGCGATTACACCACATTGCGGTATCAAcgctgtct > 2:396844/1‑135 (MQ=255) gCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAg < 2:237146/140‑1 (MQ=255) gCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAg < 2:358339/140‑1 (MQ=255) gCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAg < 2:293404/140‑1 (MQ=255) gCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAg < 1:857084/140‑1 (MQ=255) gCCGCTATAGCGAAAGAAATCAGAACATCTGACGCGGGCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAg < 1:645980/140‑1 (MQ=255) ccGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCCCGCCATTACACCGCATTGCGGTATCAACGCGCCCTTAGc > 2:650286/1‑140 (MQ=255) cGCTATAGCGAAATAGATCAGAGAAGCAGGCGCGGTCCTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCt < 1:743547/140‑1 (MQ=255) cGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCt < 2:765452/140‑1 (MQ=255) tataGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAGTTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAg < 1:309010/140‑1 (MQ=255) tataGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAg < 2:271421/140‑1 (MQ=255) taGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGtt < 1:155860/140‑1 (MQ=255) gAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGAt < 1:169617/140‑1 (MQ=255) gAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGAt < 2:322452/140‑1 (MQ=255) taaatCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATagag > 2:1225198/1‑140 (MQ=255) aatcagaaaatcagaCGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTACGGTATCGACGAGCGCTTAGCGCAGTTGGATAGAGCa > 1:404845/1‑140 (MQ=255) atcagaaaatcagaCTCGGTCGATCGCTTATTCAGCACCCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCaa < 1:729192/140‑1 (MQ=255) tcagaaaatcagaCGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAAc < 1:1374297/140‑1 (MQ=255) tcagaaaatcagaCGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAAc > 2:1094191/1‑140 (MQ=255) cagaaaatcagaCGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACg < 1:1131098/140‑1 (MQ=255) cagaaaatcagaCGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACg > 2:1429930/1‑140 (MQ=255) gaaaatcagaCGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGAc < 2:190802/140‑1 (MQ=255) gaaaatcagaCGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGAc < 2:1006909/140‑1 (MQ=255) tcagaCGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCt < 1:1457605/140‑1 (MQ=255) tCGTTCACTTGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTggg > 2:1124523/1‑140 (MQ=255) ttGTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGt < 1:1445995/140‑1 (MQ=255) gTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGCTAGAGCACCGACCTGCTAAGTGGTGGGCCGCAGGTTc > 1:690091/1‑140 (MQ=255) gTTCAGCAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGAGCTGCTAAGTCGTGGGCCGCAGGTTc > 1:722713/1‑140 (MQ=255) cAACCAGATCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATcc > 2:1454951/1‑140 (MQ=255) aTCAAAAGCCATTGACTAAGCAGGGGTTGACAGTACAATCCACGCGATCACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAggg < 2:690091/140‑1 (MQ=38) aTCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAggg < 1:1225198/140‑1 (MQ=255) aTCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAggg < 1:790388/140‑1 (MQ=255) tCAAAAGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGgc > 2:162704/1‑140 (MQ=255) aaaaGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGgcgc < 1:1124523/140‑1 (MQ=255) aaaGACATTGACTCAGCGAGGGTTGACCGTATAATACACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGgcgcg < 2:678742/140‑1 (MQ=255) aaGACATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAggg < 1:1300707/135‑1 (MQ=255) | GAAATTGTACTTTGATACATGAAAATACGGGTTTTCTTGATTCAGACGCGCAGCGGTGTGCGTTTGTTTGCCGCTATAGCGAAATAAATCAGAAAATCAGACGCGGTCGTTCACTTGTTCAGCAACCAGATCAAAAGCCATTGACTCAGCAAGGGTTGACCGTATAATTCACGCGATTACACCGCATTGCGGTATCAACGCGCCCTTAGCTCAGTTGGATAGAGCAACGACCTTCTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCG > NC_000913/564524‑564796 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |