Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	939,183	A→G	N397S (AAC→AGC)	rarA →	recombination factor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	939,183	0	A	G	100.0%	301.2 / NA	85	N397S (AAC→AGC)	rarA	recombination factor
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (48/37);  total (48/37)

CGTTTAAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCC  >  NC_000913/939048‑939317                                                                                                                                        |                                                                                                                                       cGTTTAAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCt                                                                                                                                    >  2:26921/1‑140 (MQ=255)  gTTTAAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAGGCAAGCGCtt                                                                                                                                   >  2:1255108/1‑140 (MQ=255)  gTTTAAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCtt                                                                                                                                   >  1:224031/1‑140 (MQ=255)  gTTTAAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCtt                                                                                                                                   >  2:94961/1‑140 (MQ=255)  gTTTAAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCtt                                                                                                                                   >  2:677034/1‑140 (MQ=255)  gTTTAAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCtt                                                                                                                                   >  2:223855/1‑140 (MQ=255)  gTTTAAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCtt                                                                                                                                   >  1:181030/1‑140 (MQ=255)  gTTTAAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCtt                                                                                                                                   >  2:1208170/1‑140 (MQ=255)  gTTTAAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCtt                                                                                                                                   >  1:1451687/1‑140 (MQ=255)           cgcgCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCg                                                                                                                          <  1:94961/140‑1 (MQ=255)            gcgcTGGCCGTTGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCgg                                                                                                                         <  2:1296936/140‑1 (MQ=255)            gcgcTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCgg                                                                                                                         <  1:1295166/140‑1 (MQ=255)              gcTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTg                                                                                                                       <  1:1294405/140‑1 (MQ=255)                tGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAg                                                                                                                     <  1:116463/140‑1 (MQ=255)                  gCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACACTCATGAGGAATCAAGCGCTTTTGCTGCCGGTGAGGt                                                                                                                   >  1:661574/1‑140 (MQ=255)                            gcgAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCccg                                                                                                         >  2:198133/1‑140 (MQ=255)                            gcgAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCccg                                                                                                         >  2:973372/1‑140 (MQ=255)                                  gCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGaa                                                                                                   <  1:26921/140‑1 (MQ=255)                                   cagggATTATGACGTCCCGGTTCATCTGCTTAATGCGACGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGaaa                                                                                                  <  1:467672/137‑1 (MQ=255)                                    ccGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAAt                                                                                                 >  2:1011752/1‑140 (MQ=255)                                            tGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACaaa                                                                                         <  1:677034/140‑1 (MQ=255)                                            tGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACaaa                                                                                         <  2:61857/140‑1 (MQ=255)                                             gACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAac                                                                                        <  2:121544/140‑1 (MQ=255)                                             gACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAac                                                                                        <  1:831010/140‑1 (MQ=255)                                             gACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAac                                                                                        <  1:798687/140‑1 (MQ=255)                                              aCGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAaca                                                                                       >  2:320022/1‑140 (MQ=255)                                              aCGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAaca                                                                                       <  1:1208170/140‑1 (MQ=255)                                               cGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAacac                                                                                      <  2:944656/140‑1 (MQ=255)                                                 tGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCGTATGCTGCTGGTGAGGTTTACTTCCAGCCGCAAATAGCACAAacactg                                                                                    >  2:467672/1‑138 (MQ=255)                                                  gCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAaca                                                                                       <  1:290870/136‑1 (MQ=255)                                                  gCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAaca                                                                                       >  2:290870/1‑136 (MQ=255)                                                  gCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAaca                                                                                       >  2:386025/1‑136 (MQ=255)                                                  gCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAaca                                                                                       >  2:388530/1‑136 (MQ=255)                                                  gCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAaca                                                                                       <  1:386025/136‑1 (MQ=255)                                                  gCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAaca                                                                                       <  1:388530/136‑1 (MQ=255)                                                  gCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCt                                                                                   >  1:1006834/1‑140 (MQ=255)                                                          aTTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTc                                                                           <  2:1006834/140‑1 (MQ=255)                                                                 tAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACaa                                                                    >  2:355364/1‑140 (MQ=255)                                                                  aaTGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAGGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACaaa                                                                   <  1:1255108/140‑1 (MQ=255)                                                                      cgcCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCTGAAATAGCACAAACACCCTATTATTTCCCGACAAACAgg                                                               >  2:476450/1‑140 (MQ=255)                                                                       gcCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAggg                                                              <  2:1451687/140‑1 (MQ=255)                                                                           acgaAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCCCAACCACGCTATTATTTCCCGACAAACAGGGGCCt                                                          >  2:638683/1‑140 (MQ=255)                                                                                        aGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTGTTATTTCTCGAGAAGCAGGGGACTTGAAGGCAAGAtt                                             >  1:449954/1‑140 (MQ=255)                                                                                         ggAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTg                                            >  1:1006845/1‑140 (MQ=255)                                                                                         ggAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTg                                            >  2:200745/1‑140 (MQ=255)                                                                                         ggAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTg                                            >  1:348285/1‑140 (MQ=255)                                                                                           aaaTGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGc                                          >  2:1183755/1‑140 (MQ=255)                                                                                                ggCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGaaaa                                     <  2:1006845/140‑1 (MQ=255)                                                                                                ggCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGaaaa                                     <  1:1183755/140‑1 (MQ=255)                                                                                                 agacagggCAGGAATCTCGTTACGCGCATCATGAAGCCAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAg                                    <  1:474666/135‑1 (MQ=255)                                                                                                    aCGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTc                                 >  1:100045/1‑140 (MQ=255)                                                                                                     cGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCg                                >  1:1419351/1‑140 (MQ=255)                                                                                                     cGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCg                                >  1:343277/1‑140 (MQ=255)                                                                                                     cGGGCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATAATTTCCCGACAAACAGTGGCCTTGAGGGCAGCATTGGCGCAAAGCTCg                                >  2:718534/1‑140 (MQ=255)                                                                                                      gggCAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGc                               <  1:320022/140‑1 (MQ=255)                                                                                                      agacAGGAATATCGTCACGCTCCTGTTGATGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGc                               <  1:407632/137‑1 (MQ=255)                                                                                                         cAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCctg                            <  2:100045/140‑1 (MQ=255)                                                                                                         cAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCctg                            <  2:343277/140‑1 (MQ=255)                                                                                                         cAGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCctg                            <  2:1419351/140‑1 (MQ=255)                                                                                                         cAGGAATATCGTTACGCCCATGATGAAGCAACCCCGTATCCTGCCGGTAAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCctg                            <  2:661574/140‑1 (MQ=255)                                                                                                          aGGAATATCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAAGGGCCTTGAAGGCAGGATTGGCGAAAAGCTCGCctgg                           >  1:583764/1‑140 (MQ=255)                                                                                                              atatCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCctggctgg                       <  1:223855/140‑1 (MQ=255)                                                                                                                atCGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTggctggct                     >  2:293920/1‑140 (MQ=255)                                                                                                                  cGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGTGAAAAGCTCGCCTGGCTGGCTGa                   >  2:982595/1‑140 (MQ=255)                                                                                                                  cGTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCATGAGGGCGAGATTGGCTAAAAACTCGCctggctctgtct                   >  2:474666/1‑134 (MQ=255)                                                                                                                   gTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGaa                  >  2:1071213/1‑140 (MQ=255)                                                                                                                   gTTACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGaa                  >  1:1307332/1‑140 (MQ=255)                                                                                                                    ttACGCTCATGATGATGCAAGCTCTCATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAAc                 <  1:718534/140‑1 (MQ=255)                                                                                                                    ttACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAAc                 <  1:293920/140‑1 (MQ=255)                                                                                                                    ttACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAAc                 >  1:802444/1‑140 (MQ=255)                                                                                                                    ttACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAAc                 <  2:348285/140‑1 (MQ=255)                                                                                                                    ttACGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAAc                 <  1:198133/140‑1 (MQ=255)                                                                                                                    ttACGCTCATGATGAAGCAAGCCCTTATGCTCCCGCTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAAc                 <  2:583764/140‑1 (MQ=255)                                                                                                                      aCGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCTGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGAGAAAAGCTCGCCTGGCTGGCTGAAc                 >  2:51996/1‑138 (MQ=255)                                                                                                                      aCGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCTGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGAGAAAAGCTCGCCTGGCTGGCTGAAc                 <  1:51996/138‑1 (MQ=255)                                                                                                                      aCGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAAc                 <  2:1166153/138‑1 (MQ=255)                                                                                                                      aCGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAAc                 >  1:1166153/1‑138 (MQ=255)                                                                                                                       cGCTCATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGTGCCTTGAAAGCAGGATTGGCGAAAAGCTCGgctggctggctgctgtct              >  2:407632/1‑134 (MQ=255)                                                                                                                           cATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCa          >  2:1238493/1‑140 (MQ=255)                                                                                                                           cATGATGAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCa          >  1:761349/1‑140 (MQ=255)                                                                                                                            atgatgAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCaa         >  1:240692/1‑140 (MQ=255)                                                                                                                            atgatgAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCaa         >  2:1521415/1‑140 (MQ=255)                                                                                                                            atgatgAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCaa         >  2:1074170/1‑140 (MQ=255)                                                                                                                            atgatgAAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCaa         >  2:1286199/1‑140 (MQ=255)                                                                                                                             tgatgaAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAAc                 >  1:1249154/1‑131 (MQ=255)                                                                                                                             tgatgaAGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAAc                 <  2:1249154/131‑1 (MQ=255)                                                                                                                                 gaAGCAAGCGCTTATTCTGCCGCTGTGGTTTACTTCCAGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAg    <  1:476450/140‑1 (MQ=255)                                                                                                                                   aGCAAGCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGcc  <  1:1011752/140‑1 (MQ=255)                                                                                                                                        |                                                                                                                                       CGTTTAAAGCCGCGCTGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCC  >  NC_000913/939048‑939317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑