Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,414,119	C→T	L225L (CTG→CTA)	recT ←	Rac prophage; recombinase, DNA renaturation

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,414,119	0	C	T	100.0%	323.3 / NA	96	L225L (CTG→CTA)	recT	Rac prophage; recombinase, DNA renaturation
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (50/46);  total (50/46)

AATTATTCCTCTGAATTATCGATTACACTGTATTCCCCGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAACAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCATAACTTCAAACTGAGTACCTCCGTCTT  >  NC_000913/1413982‑1414255                                                                                                                                          |                                                                                                                                         aaTTATTCCTCTGAATTATCGATTACACTGTATTCCCCGGTTAATACAGACGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAg                                                                                                                                        >  2:302994/1‑140 (MQ=255)  attattCCTCTGAATTATCGATTACACTGTATTCCCCGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAgg                                                                                                                                       <  2:1407303/140‑1 (MQ=255)       tCCTCTGAATTATCGATTACACTGTATTCCCCGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATATTGCACGCTAGATATCAATTGATACGGGCAAATATTTGAATAGGcgacg                                                                                                                                  >  2:617699/1‑140 (MQ=255)         ctctGAATTATCGATTACACTGTATTCCCCGGTTATTACAGAGGAATCGGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGaa                                                                                                                                <  2:598500/140‑1 (MQ=255)          tctGAATTATCGATTACACTGTATTCCCCGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAAt                                                                                                                               <  2:186727/140‑1 (MQ=255)           ctGAATTATCGATTACACTGTATTCCCCGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCCCGCTGGATCTCAATTGATACGGGCAGATATATGAATAGGCGACGAATa                                                                                                                              >  2:539412/1‑140 (MQ=255)           ctGAATTATCGATTACACTGTATTCCCCGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATa                                                                                                                              >  1:899488/1‑140 (MQ=255)              aaTTATCGATTACACTGTATTCCCCGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGATGGATCTCCATTCAAAGGGGCAAATCTTTGCCTAGGCGAAGAATAGcc                                                                                                                           >  2:715989/1‑140 (MQ=255)                   tCGATTACACTGTATTCCCCGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGtttt                                                                                                                      >  2:1200811/1‑140 (MQ=255)                    cGATTACACTGTATTCCCCGGTTAATACAAAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTc                                                                                                                     <  1:677764/140‑1 (MQ=255)                    agATTACACTGTATTCCCCGGTCAATACAGAGGAATCTGTAGGATCGACTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTc                                                                                                                     <  2:418033/139‑1 (MQ=255)                         acacTGTATTCCCCGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGc                                                                                                                <  2:328400/140‑1 (MQ=255)                         acacTGTATTCCCCGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGc                                                                                                                <  2:216575/140‑1 (MQ=255)                         acacTGTATTCCCCGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGc                                                                                                                <  1:953369/140‑1 (MQ=255)                               tATTCCCCGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATttc                                                                                                          >  2:362016/1‑140 (MQ=255)                                 ttCCCCGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATGGCCGTTGTCTTTGCCATttcct                                                                                                        >  1:418033/1‑138 (MQ=255)                                 ttCCCCGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATttctt                                                                                                        >  1:805473/1‑140 (MQ=255)                                 ttCCCCGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATttctt                                                                                                        >  2:312777/1‑140 (MQ=255)                                 ttCCCCGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATttctt                                                                                                        >  2:940964/1‑140 (MQ=255)                                  tCCCCGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATttcttc                                                                                                       >  2:808044/1‑140 (MQ=255)                                    cccGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTccc                                                                                                     >  1:790167/1‑140 (MQ=255)                                     ccGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCa                                                                                                    <  1:808044/140‑1 (MQ=255)                                      cGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAg                                                                                                   >  2:1521629/1‑140 (MQ=255)                                         ttAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGc                                                                                                                >  2:1030441/1‑124 (MQ=255)                                         ttAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGc                                                                                                                <  1:1030441/124‑1 (MQ=255)                                         ttAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGa                                                                                                >  1:1514142/1‑140 (MQ=255)                                         ttAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGa                                                                                                >  1:1283650/1‑140 (MQ=255)                                           aaTACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCa                                                                                                    <  2:1501262/134‑1 (MQ=255)                                           aaTACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCa                                                                                                    >  1:1501262/1‑134 (MQ=255)                                           aaTACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGt                                                                                              <  1:1521629/140‑1 (MQ=255)                                                 gagGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCa                                                                                        >  1:1276847/1‑140 (MQ=255)                                                 gagGAATCTGCAGGAGCGATTGCCATTGGATCCTTTTGATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCa                                                                                        <  1:489877/140‑1 (MQ=255)                                                  agGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCAc                                                                                       >  1:309231/1‑140 (MQ=255)                                                  agGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCAc                                                                                       >  2:210871/1‑140 (MQ=255)                                                   ggAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCTTTTCTTCCCAGTGAGTTACCCACg                                                                                      >  2:1443036/1‑140 (MQ=255)                                                   ggAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACg                                                                                      >  1:1061443/1‑140 (MQ=255)                                                     aaTCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGc                                                                                    <  1:344039/140‑1 (MQ=255)                                                     aaTCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGc                                                                                    <  1:1252114/140‑1 (MQ=255)                                                     aaTCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGc                                                                                    <  1:1200811/140‑1 (MQ=255)                                                     aaTCTGCAGGATCGACTGTCAGAGGATCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGc                                                                                    <  1:715989/140‑1 (MQ=255)                                                       tCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGccc                                                                                  >  2:965293/1‑140 (MQ=255)                                                       tCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGccc                                                                                  >  1:1190652/1‑140 (MQ=255)                                                       tCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGccc                                                                                  >  2:52822/1‑140 (MQ=255)                                                       tCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGccc                                                                                  >  1:1078603/1‑140 (MQ=255)                                                       tCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGccc                                                                                  >  2:842822/1‑140 (MQ=255)                                                       tCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTGTCTTTGCGATTGCTGCCCAGTGAGTTACCCACGGccc                                                                                  >  1:407510/1‑140 (MQ=255)                                                              gATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGttatta                                                                           >  2:113090/1‑140 (MQ=255)                                                               aTCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTAc                                                                          <  2:208492/140‑1 (MQ=255)                                                               aTCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTAc                                                                          <  1:302994/140‑1 (MQ=255)                                                               aTCGATTGTCAGTGGATCCTTTCCATCCATTGATACTTCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTAc                                                                          <  1:617699/140‑1 (MQ=255)                                                                  gATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAg                                                                       <  1:210871/140‑1 (MQ=255)                                                                   aTTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGc                                                                      <  1:539412/140‑1 (MQ=255)                                                                   aTTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGc                                                                      >  1:6982/1‑140 (MQ=255)                                                                   aTTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGc                                                                      >  1:1304849/1‑140 (MQ=255)                                                                         aGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACt                                                                >  2:18714/1‑140 (MQ=255)                                                                         aGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACt                                                                >  1:1185173/1‑140 (MQ=255)                                                                         aGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACt                                                                >  1:1122040/1‑140 (MQ=255)                                                                             gTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAgg                                                            >  2:1530940/1‑140 (MQ=255)                                                                             gTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAgg                                                            >  2:81015/1‑140 (MQ=255)                                                                              ttCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGGGTTACCCACGGACCGTTATTAGCAGCTTTACTCAGGc                                                           >  1:580011/1‑140 (MQ=255)                                                                                ccTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTg                                                         <  1:362016/140‑1 (MQ=255)                                                                                ccTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTg                                                         <  1:18714/140‑1 (MQ=255)                                                                                     tCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCAGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCAc                                                    <  1:1357494/140‑1 (MQ=255)                                                                                      cATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCAcc                                                   <  2:309231/140‑1 (MQ=255)                                                                                       aTCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCa                                                  <  2:899488/140‑1 (MQ=255)                                                                                       aTCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCa                                                  >  1:327680/1‑140 (MQ=255)                                                                                        tCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCTTTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCTCACCAg                                                 <  1:1443036/140‑1 (MQ=255)                                                                                           aTTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAATTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTc                                              >  2:1486289/1‑140 (MQ=255)                                                                                           aTTGATACTGCACGCTGGATCTCAATTAATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTc                                              >  2:158228/1‑140 (MQ=255)                                                                                            ttGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCa                                             <  2:1078603/140‑1 (MQ=255)                                                                                              gATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAAt                                           <  1:940964/140‑1 (MQ=255)                                                                                               aTACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACTCACGGCCCGTTAATACCAGCTTTACGCAGGGTGCGCACCAGCTCAATc                                          >  2:410378/1‑140 (MQ=255)                                                                                               aTACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTAATTACCAGCTTTACACAGGCTGCGCACCAGCTCAATc                                          >  1:621452/1‑140 (MQ=255)                                                                                                  cTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGt                                       <  2:327680/140‑1 (MQ=255)                                                                                                    gCACGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGttt                                     >  1:891086/1‑140 (MQ=255)                                                                                                       cGCTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTgcg                                  <  1:302348/140‑1 (MQ=255)                                                                                                         cTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCATCTTAACTAAGGCTGCGGACCAACTCAATCTGTTTGcgcg                                >  2:563330/1‑140 (MQ=255)                                                                                                         cTGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCCTTACTCACGCTACGTACCAGCACAATCTGTTTGcgcg                                >  1:611251/1‑140 (MQ=255)                                                                                                          tGGATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGt                               >  2:865141/1‑140 (MQ=255)                                                                                                            gATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCa                             <  2:1122040/140‑1 (MQ=255)                                                                                                            gATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCa                             <  2:1185173/140‑1 (MQ=255)                                                                                                            gATCTCAATTGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCa                             <  2:790167/140‑1 (MQ=255)                                                                                                              tctcAATTGATACGGTCAAATAATTCAATAGGCGACGTATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCATa                           <  1:563330/140‑1 (MQ=255)                                                                                                              tctcAATTGATACGGACAAATACTTGAATGGGCGACGCATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCATa                           <  1:521846/140‑1 (MQ=255)                                                                                                                tcAATTGATACGGGCAAGTATTAGAATAGGCTACGCATACCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCATAAc                         <  2:637727/140‑1 (MQ=255)                                                                                                                    ttGATACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCATAACTTCa                     <  2:1514142/140‑1 (MQ=255)                                                                                                                        tACGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCATAACTTCAAACt                 >  1:111965/1‑140 (MQ=255)                                                                                                                         aCGGGCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCATAACTTCAAACTg                >  1:929261/1‑140 (MQ=255)                                                                                                                           gggCAAATATTTGAATAGGCGAGGAATAGCCCTTTGCTTTGCCATTTCGTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCATAACTTCAAACTGAg              <  2:611251/140‑1 (MQ=255)                                                                                                                           gggCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCATAACTTCAAACTGAg              <  2:1283650/140‑1 (MQ=255)                                                                                                                            ggCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCATAACTTCaaa                   >  1:1426212/1‑134 (MQ=255)                                                                                                                            ggCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCATAACTTCaaa                   <  2:1061831/134‑1 (MQ=255)                                                                                                                            ggCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCATAACTTCaaa                   >  1:1061831/1‑134 (MQ=255)                                                                                                                            ggCAAATATTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCATTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCATAACTTCaaa                   <  2:1426212/134‑1 (MQ=255)                                                                                                                              cAAATATTTGAATAGGCCACGACTAGCCGTTCTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCATAACTTCAAACTGAGTAc           <  2:580011/140‑1 (MQ=255)                                                                                                                                   atTTGAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCATAACTTCAAACTGAGTACCTCCg      <  2:1190652/140‑1 (MQ=255)                                                                                                                                       gAATAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCATAACTTCAAACTGAGTACCTCCGTCtt  <  1:113090/140‑1 (MQ=255)                                                                                                                                          |                                                                                                                                         AATTATTCCTCTGAATTATCGATTACACTGTATTCCCCGGTTAATACAGAGGAATCTGCAGGATCGATTGTCAGTGGTTCCTTTTCATCCATTGATACTGCACGCTGGATCTCAATTGATACGGGCAAATATTTGAACAGGCGACGAATAGCCGTTTTCTTTGCCATTTCTTCCCAGTGAGTTACCCACGGCCCGTTATTACCAGCTTTACTCAGGCTGCGCACCAGCTCAATCTGTTTGCGCGTCATAACTTCAAACTGAGTACCTCCGTCTT  >  NC_000913/1413982‑1414255

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑