Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,135,901 Δ1 bp coding (338/699 nt) flgH → flagellar L‑ring protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,135,8990T.100.0% 177.3 / NA 42coding (336/699 nt)flgHflagellar L‑ring protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (27/15);  total (27/15)

ATCGTCGACCACGCAATATTGGCGATACGCTGACCATCGTGTTGCAGGAGAACGTCAGCGCCAGCAAAAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTATTTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCCAGCAATACCTTTAGCGGCACGTTGACGGTGACGGTTGACCAGGTACTGGTC  >  NC_000913/1135766‑1136034
                                                                                                                                     |                                                                                                                                       
aTCGTCGACCACGCAATATTGGCGATACGCTGACCATCGTGTTGCAGGAGAACGTCAGCGCCAGCAAAAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAgg                                                                                                                                  <  1:230156/140‑1 (MQ=255)
  cgtcgACCACGCAATATTGGCGATACGCTGACCATCGTGTTGCAGGAGAACGTCAGCGCCAGCAAAAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAgggg                                                                                                                                <  2:640081/140‑1 (MQ=255)
   gtcgACCACGCAATATTGGCGATACGCTGACCATCGTGTTGCAGGAGAACGTCAGCGCCAGCAAAAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGc                                                                                                                               >  2:508249/1‑140 (MQ=255)
   gtcgACCACGCAATATTGGCGATACGCTGACCATCGTGTTGCAGGAGAACGTCAGCGCCAGCAAAAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACGAATTTGGCCTTTGATAGTGTGGAGCGCTA‑TCGCAGGGGc                                                                                                                               >  2:463969/1‑140 (MQ=255)
            gCAATATTGGCGATACGCTGACCATCGTGTTGCAGGAGAACGTCAGCGCCAGCAAAAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACGAATTTTGGTTTTTATACTGTGCCGCACTA‑TTGCAGGGGCTGTTTGGTa                                                                                                                      >  2:321727/1‑140 (MQ=255)
             cAATATTGGCGATACGCTGACCATCGTGTTGCAGGAGAACGTCAGCGCCAGCAAAAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTaa                                                                                                                     <  2:678060/140‑1 (MQ=255)
                        aTACGCTGACCATCGTGTTGCAGGAGAACGTCAGCGCCAGCAAAAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGccc                                                                                                          >  1:631375/1‑139 (MQ=255)
                         tACGCTGACCATCGTGTTGCAGGAGAACGTCAGCGCCAGCAAAAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGa                                                                                                         >  2:949903/1‑140 (MQ=255)
                          aCGCTGACCATCGTGTTGCAGGAGAACGTCAGCGCCAGCAAATGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGAt                                                                                                        >  1:658551/1‑140 (MQ=255)
                          aCGCTGACCATCGTGTTGCAGGAGAACGTCAGCGCCAGCAAAAGCTCCTCTGCGAATGTCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGAt                                                                                                        >  1:1018859/1‑140 (MQ=255)
                          aCGCTGACCATCGTGTTGCAGGAGAACGTCAGCGCCAGCAAAAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGTGCTGTTTGGTAACGCTCGTGCCGAt                                                                                                        >  1:243261/1‑140 (MQ=255)
                                     cGTGTTGCAGGAGAACGTCAGCGCCAGCAAAAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGTGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTc                                                                                             <  2:243261/140‑1 (MQ=255)
                                     cGTGTTGCAGGAGAACGTCAGCGCCAGCAAAAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTc                                                                                             >  1:798521/1‑140 (MQ=255)
                                      gtgtTGCAGGAGAACGTCAGCGCCAGCAAAAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGGTCGTGCTGATGTCGAAGCCTcc                                                                                            >  1:339739/1‑140 (MQ=255)
                                      gtgtTGCAGGAGAACGTCAGCGCCACCAACAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTcc                                                                                            <  1:321727/140‑1 (MQ=255)
                                       tgtTGCAGGAGAACGTCAGCGCCAGCAAAAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCg                                                                                           >  1:501494/1‑140 (MQ=255)
                                         ttGCAGGAGAACGTCAGCGCCAGCAAAAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCggt                                                                                         <  1:949903/140‑1 (MQ=255)
                                          tGCAGGAGAACGTCAGCGCCAGCAAAAGCTCCTCTGTGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCggtg                                                                                        >  1:892514/1‑140 (MQ=255)
                                               gagaACGTCAGCGCCAGCAAATGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAac                                                                                   <  2:658551/140‑1 (MQ=255)
                                               gagaACGTCAGCGCCAGCAAAAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAac                                                                                   >  1:698065/1‑140 (MQ=255)
                                                      tcggcgcCAGCAAAAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACCGGGCCGCGCTA‑TTGCAGGGGCTGATTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGTGGGTAACACGTTCa                                                                            >  2:210458/4‑140 (MQ=255)
                                                                         ctctGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCaa                                                         >  2:683380/1‑140 (MQ=255)
                                                                           ctGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATg                                                       <  1:683380/140‑1 (MQ=255)
                                                                           ctGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATg                                                       <  1:508249/140‑1 (MQ=255)
                                                                                aaTGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCGCCGGTGGTAACACGTTCAACGGAAAGTGCGGGGCCGATGCCAGc                                                  >  1:627202/1‑140 (MQ=255)
                                                                                        ccGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCCAGCAATACCtt                                          <  2:835217/140‑1 (MQ=255)
                                                                                                     aCTAATTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGTCGGGGCCAATGTCAGCAATACTTTTAGCGGCACGTtg                             >  1:444733/1‑140 (MQ=255)
                                                                                                         aTTTTGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCCAGCAATACCTTTAGCGGCACGTtgacgg                         >  2:794668/1‑140 (MQ=255)
                                                                                                          ttttGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCCAGCAATACCTTTAGCGGCACGTtgacggt                        >  2:749994/1‑140 (MQ=255)
                                                                                                          ttttGGCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCCAGCAATACCTTTAGCGGCACGTtgacggt                        <  1:656544/140‑1 (MQ=255)
                                                                                                               gCTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCCAGCAATACCTTTAGCGGCACGTtgacggtgacgg                   >  2:977041/1‑140 (MQ=255)
                                                                                                                cTTTGATACTGTGCCGCGCTA‑TTGCTGGGGCTGTTTGTTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCCAGCAATACCTTTAGCGGCACGTTgacggtgacggt                  <  1:461689/140‑1 (MQ=255)
                                                                                                                cTTTGATACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCAGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCCAGCAATACCTTTAGCGGCACGTTgacggtgacggt                  >  1:713257/1‑140 (MQ=255)
                                                                                                                cTTTGACACCGTTCCGCGCTA‑TTGCAGGGGCTCTTTGGTAACGCTGGTGTCGATGTCGAAGCCACCGGTGGTATCACGTTCAACGGAAAGGGCGGGGCCAATGCCAGCAATCCCCTTAGCGGCACGTAgacggtgacggt                  <  2:627202/140‑1 (MQ=255)
                                                                                                                agttGATACTGTGCCTCGCTA‑TTGCCGGGGCTGTTTGTTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCCAGCAATACCTTTAGCGGCACGTTgacggtgacggt                  <  1:493665/138‑1 (MQ=255)
                                                                                                                     aTACTGTGCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCCAGCAATACCTTTAGCGGCACGTTGACGGTGACGGTTGAcc             <  2:698065/140‑1 (MQ=255)
                                                                                                                         tgtgCCGCGCTA‑TTGCAGGGGCTGTTTGGTAATGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCCAGCAATACCTTTAGCGGCACGTTGACGGTGACGGTTGACCAGGt         >  2:728625/1‑140 (MQ=255)
                                                                                                                         tgtgCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCCAGCAATGCCTTTAGGGGCACGATGACGGAGACGGTTGACCAGGt         >  1:332048/1‑140 (MQ=255)
                                                                                                                           tgCCGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCCAGCAATACCTTTAGCGGCACGTTGACGGTGACGGTTGACCAGGTAc       >  2:601813/1‑140 (MQ=255)
                                                                                                                             ccGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCGAGCAATACCTTTGGGGAAACGTTGAAGGTGGAGGTTGACCAGGTAcct     >  2:493665/1‑138 (MQ=255)
                                                                                                                             ccGCGCTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCAAGCAATACTTTTTGCCACACGATGAAGGTGTCGGTTGACCAGGTACTg     >  2:364740/1‑140 (MQ=255)
                                                                                                                               gcgcTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCCAGCAATACCTTTAGCGGCACGTTGACGGTGACGGTTGACCAGGTACTGGt   <  2:1018859/140‑1 (MQ=255)
                                                                                                                                cgcTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCCAGCAATACCTTTAGCGGCACGTTGACGGTGACGGTTGACCAGGTACTGGTc  >  1:936391/1‑140 (MQ=255)
                                                                                                                                cgcTA‑TTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCCAGCAATACCTTTAGCGGCACGTTGACGGTGACGGTTGACCAGGTACTGGTc  >  1:124329/1‑140 (MQ=255)
                                                                                                                                     |                                                                                                                                       
ATCGTCGACCACGCAATATTGGCGATACGCTGACCATCGTGTTGCAGGAGAACGTCAGCGCCAGCAAAAGCTCCTCTGCGAATGCCAGCCGTGACGGTAAAACTAATTTTGGCTTTGATACTGTGCCGCGCTATTTGCAGGGGCTGTTTGGTAACGCTCGTGCCGATGTCGAAGCCTCCGGTGGTAACACGTTCAACGGAAAGGGCGGGGCCAATGCCAGCAATACCTTTAGCGGCACGTTGACGGTGACGGTTGACCAGGTACTGGTC  >  NC_000913/1135766‑1136034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑