| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,923,946 | (G)6→7 | coding (646/873 nt) | yebZ ← | putative inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,923,940 | 1 | . | G | 94.7% | 126.6 / ‑0.1 | 38 | coding (652/873 nt) | yebZ | putative inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base G (16/20); total (18/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.18e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACAAACCAGGGTGCCGCACGATCTTCATCCTGCCTCATGCGCGGTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGT‑GGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAACGCATCAGCGCCTGAATAGCCTGGTGTCGCCAACGGCCTTTGATGAGT > NC_000913/1923801‑1924073 | acaAACCAGGGTGCCGCACGATCTTCATCCTGCCTCATGCGCGGTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCAACAGGATGGGTTTTAGCAATAAGAGTAGGCCACAGTAAGTCGTAAGCGt > 2:295657/1‑140 (MQ=255) gggTGCCGCACGATCTTCATCCTGCCTCATGCGCGGTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGT‑ggg‑gggga > 2:15343/1‑138 (MQ=255) gggTGCCGCACGATCTTCATCCTGCCTCATGCGCGGTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGT‑ggg‑gggga > 1:959745/1‑138 (MQ=255) ggTGCCGCACGATCTTCATCCTGCCTCATGCGCGGTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGT‑ggg‑ggggaa < 2:959745/140‑4 (MQ=255) ggTGCCGCACGATCTTCATCCTGCCTCATGCGCGGTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGT‑GGG‑GGGgaa > 2:990383/1‑140 (MQ=255) gCCGCACGATCTTCATCCTGCCTCATGCGCGGTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATc < 1:990383/140‑1 (MQ=255) cGCACGATCTTCATCCTGCCTCATGCGCGGTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCg > 2:527824/1‑140 (MQ=255) gATCTTCATCCTGCCTCATGCGCGGTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAAt < 1:924510/140‑1 (MQ=255) gATCTTCATCCTGCCGCATGCGCGGTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAAt < 1:418086/140‑1 (MQ=255) tCATCCTGCCTCATGCGCGGTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATcaaca < 2:55010/140‑1 (MQ=255) ccTCATGCGCGGTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTa > 2:724730/1‑140 (MQ=255) ccTCATGCGCGGTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTa > 1:771662/1‑140 (MQ=255) cATGCGCGGTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGG‑GGGAGGGAAATCAGGTATTCAACAATGCATTAAGc > 2:349300/1‑140 (MQ=255) aTGCGCGGTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCa < 2:570840/140‑1 (MQ=255) gTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCt < 2:127598/140‑1 (MQ=255) gTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCt < 1:724730/140‑1 (MQ=255) cAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGc < 1:188746/140‑1 (MQ=255) aaCATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGt < 2:161513/140‑1 (MQ=255) tAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGc > 2:611521/1‑140 (MQ=255) aCGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATCCATAAATCACGCCCCTTGCCAGTACGCCg > 1:323240/1‑140 (MQ=255) tgcAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATGAAGCACGTCGCTTGACAGTACGCCGATCACCGCaaaa > 1:494400/2‑140 (MQ=255) aTGACCACCATAATCATTACCACGATGGCTAAGAGAAATTAGAGTTGGTCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGcc < 2:491495/140‑1 (MQ=255) aTGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGcc < 2:144787/140‑1 (MQ=255) accaTAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCAcc > 2:138619/1‑140 (MQ=255) tcatcaCCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGaaaa > 1:923360/1‑140 (MQ=255) caCCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTATGCCGATCACCGAAAGATGCCCACACCAGGAAAAACGc > 1:416313/1‑140 (MQ=255) aCCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAACGCa > 2:83915/1‑140 (MQ=255) aCCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATG‑CCGCACCAGGAAAAACGCAt > 1:237320/1‑140 (MQ=255) aCCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTACCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAACGCa > 2:40945/1‑140 (MQ=255) cAGGATGGCTTTGAGTAATAAGTGTCGGCTCCAGTAACTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAACGCATc < 1:325337/140‑1 (MQ=255) ggATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAACGCATCAg < 1:942763/140‑1 (MQ=255) ggATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAACGCATCAg < 1:527824/140‑1 (MQ=255) aTGGCTTTGAGCAATTAGAGTTCGCCCCATTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAACGCATCAgcg < 1:295657/140‑1 (MQ=255) aTGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAACGCATCAgcg < 2:807277/140‑1 (MQ=255) ttGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAACGCATCAGCGCCTGaa < 1:138619/140‑1 (MQ=255) aGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAACGCATCAGCGCCTGAATAg > 2:957795/1‑140 (MQ=255) gCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAACGCATCAGCGCCTGAATAGc < 1:89996/140‑1 (MQ=255) cAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAACGCATCAGCGCCTGAATAGcc > 1:583067/1‑140 (MQ=255) tAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAACGCATCAGCGCCTGAATAGCCTgg > 1:560843/1‑140 (MQ=255) tCGTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTATGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAACGCATCAGCGCCTGAATAGCCTGGTGTCGCCAACGGCCTTtgat < 1:15343/140‑1 (MQ=255) gTAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATG‑CCGCACCAGGAAAAACGCATCAGCGCCTGAATAGCCTGGTGTCGCCAACGGCCTTTGATGAg < 2:237320/140‑1 (MQ=255) tAAGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAACGCATCAGCGCCTGAATAGCCTGGTGTCGCCAACGGCCTTTGATGAg < 1:671874/140‑1 (MQ=255) aaGCGTGGGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAGCGCATCAGGGCCTGAAAAGCCTGGTTTCGCGAACGGCCTTTGATGAGt > 2:279615/1‑140 (MQ=255) | ACAAACCAGGGTGCCGCACGATCTTCATCCTGCCTCATGCGCGGTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGT‑GGG‑GGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAACGCATCAGCGCCTGAATAGCCTGGTGTCGCCAACGGCCTTTGATGAGT > NC_000913/1923801‑1924073 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |